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Report for CCDS5502.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5502.1 Public Homo sapiens 7 TBRG4 24 110 108 CCDS HistoryNCBI Gene:9238Re-query CCDS DB by CCDS ID:5502.1Re-query CCDS DB by GeneID:9238See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5502.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361278.7 ENSP00000354992.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000361278.7Link to Ensembl Protein Viewer:ENSP00000354992.3Re-query CCDS DB by Nucleotide ID:ENST00000361278Re-query CCDS DB by Protein ID:ENSP00000354992
Original member Current member EBI ENST00000395655.8 ENSP00000379016.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395655.8Link to Ensembl Protein Viewer:ENSP00000379016.4Re-query CCDS DB by Nucleotide ID:ENST00000395655Re-query CCDS DB by Protein ID:ENSP00000379016
Original member Current member NCBI NM_030900.4 NP_112162.1 Accepted alive Link to Nucleotide Sequence:NM_030900.4Link to Protein Sequence:NP_112162.1Re-query CCDS DB by Nucleotide ID:NM_030900Re-query CCDS DB by Protein ID:NP_112162Link to BLAST:NP_112162.1
Original member Current member NCBI NM_199122.3 NP_954573.1 Accepted alive Link to Nucleotide Sequence:NM_199122.3Link to Protein Sequence:NP_954573.1Re-query CCDS DB by Nucleotide ID:NM_199122Re-query CCDS DB by Protein ID:NP_954573Link to BLAST:NP_954573.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_112162.1 521 Q969Z0-2 521 100% 0 0
NP_954573.1 521 Q969Z0-2 521 100% 0 0

Chromosomal Locations for CCDS 5502.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 45100325 45100426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45101258 45101372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45101503 45101614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45101825 45102070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45102347 45102491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45103333 45103443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45105441 45105764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45108827 45109237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1566 nt):
ATGGCAGCTCACCTGGTAAAGCGATGCACGTGCCTCCTGAGAGAAGCTGCTCGTCAGGCCCCTGCCATGG
CTCCAGTTGGCCGACTGAGACTTGCCTGGGTAGCCCATAAGACTCTGACTTCCTCAGCCACCTCACCCAT
TTCCCACCTCCCAGGTTCCTTGATGGAGCCGGTGGAGAAGGAACGAGCATCTACTCCCTACATAGAGAAG
CAGGTGGACCACCTCATCAAGAAGGCCACAAGGCCAGAGGAGCTCCTGGAGCTACTTGGTGGCAGTCACG
ACTTGGACAGCAATCAAGCAGCAATGGTACTTATCCGGCTCTCTCACTTGCTGTCTGAGAAGCCAGAAGA
TAAAGGCTTGCTCATACAGGATGCCCACTTTCATCAACTTCTCTGTCTGCTCAACAGTCAGATTGCCTCG
GTCTGGCATGGTACCCTCTCGAAGCTGCTGGGAAGCCTGTATGCTCTGGGCATCCCCAAGGCCTCCAAGG
AGCTGCAGTCGGTGGAGCAGGAGGTCCGCTGGCGCATGCGGAAGCTCAAGTACAAGCACCTGGCCTTCCT
GGCAGAGTCCTGTGCCACCCTCTCACAGGAGCAGCACTCGCAGGAGCTGCTGGCTGAGCTGCTCACACAC
CTGGAAAGGCGTTGGACAGAAATTGAAGATTCCCACACATTAGTGACCGTCATGATGAAGGTGGGACACC
TCTCGGAGCCACTAATGAACCGCCTGGAAGACAAGCACGTCCTGAACAGAGCGCAGGACATCACCCTGCC
CCACCTGTGCAGCGTACTTCTGGCTTTTGCGCGTCTGAACTTCCATCCAGACCAAGAGGATCAGTTCTTC
AGCCTGGTACATGAGAAGCTGGGGTCAGAGCTGCCAGGCCTGGAGCCAGCCCTGCAGGTGGACCTGGTGT
GGGCCCTGTGTGTGCTGCAGCAGGCACGGGAAGCAGAGCTGCAAGCCGTCCTCCACCCTGAATTTCACAT
CCAATTTCTAGGGGGCAAGTCTCAGAAGGATCAGAACACCTTCCAGAAGCTGCTCCACATCAACGCCACT
GCCCTGCTGGAGTACCCCGAGTACTCGGGTCCCCTTCTGCCTGCCTCGGCTGTGGCCCCTGGGCCCTCAG
CCCTTGACAGGAAGGTGACCCCCCTGCAAAAGGAGCTGCAGGAGACGCTGAAGGGGCTGCTGGGGAGCGC
CGACAAGGGCAGCCTCGAGGTGGCCACGCAGTATGGCTGGGTGCTGGATGCTGAGGTGCTGCTGGACAGT
GACGGCGAGTTTCTGCCCGTAAGGGACTTTGTGGCACCTCACCTTGCCCAGCCAACTGGGAGCCAGTCAC
CACCTCCAGGGTCTAAGAGGCTAGCGTTCTTGCGGTGGGAGTTCCCCAACTTCAACAGCCGAAGCAAGGA
CTTGCTGGGTCGCTTTGTTCTGGCCCGGCGACACATAGTGGCTGCAGGCTTCCTGATAGTGGACGTCCCA
TTCTATGAGTGGCTGGAACTCAAGTCTGAATGGCAGAAAGGCGCCTACCTCAAGGACAAGATGCGCAAAG
CGGTGGCTGAGGAGCTGGCCAAGTGA

Translation (521 aa):
MAAHLVKRCTCLLREAARQAPAMAPVGRLRLAWVAHKTLTSSATSPISHLPGSLMEPVEKERASTPYIEK
QVDHLIKKATRPEELLELLGGSHDLDSNQAAMVLIRLSHLLSEKPEDKGLLIQDAHFHQLLCLLNSQIAS
VWHGTLSKLLGSLYALGIPKASKELQSVEQEVRWRMRKLKYKHLAFLAESCATLSQEQHSQELLAELLTH
LERRWTEIEDSHTLVTVMMKVGHLSEPLMNRLEDKHVLNRAQDITLPHLCSVLLAFARLNFHPDQEDQFF
SLVHEKLGSELPGLEPALQVDLVWALCVLQQAREAELQAVLHPEFHIQFLGGKSQKDQNTFQKLLHINAT
ALLEYPEYSGPLLPASAVAPGPSALDRKVTPLQKELQETLKGLLGSADKGSLEVATQYGWVLDAEVLLDS
DGEFLPVRDFVAPHLAQPTGSQSPPPGSKRLAFLRWEFPNFNSRSKDLLGRFVLARRHIVAAGFLIVDVP
FYEWLELKSEWQKGAYLKDKMRKAVAEELAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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