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Report for CCDS42524.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42524.1 Public Homo sapiens 19 REX1BD 24 110 108 CCDS HistoryNCBI Gene:55049Re-query CCDS DB by CCDS ID:42524.1Re-query CCDS DB by GeneID:55049See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42524.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000358607.11 ENSP00000351422.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000358607.11Link to Ensembl Protein Viewer:ENSP00000351422.5Re-query CCDS DB by Nucleotide ID:ENST00000358607Re-query CCDS DB by Protein ID:ENSP00000351422
Original member Current member NCBI NM_001100418.2 NP_001093888.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001100418.2Link to Protein Sequence:NP_001093888.1Re-query CCDS DB by Nucleotide ID:NM_001100418Re-query CCDS DB by Protein ID:NP_001093888Link to BLAST:NP_001093888.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001093888.1 201 Q96EN9-1 201 100% 0 0

Chromosomal Locations for CCDS 42524.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 18588802 18588900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18588995 18589077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18589413 18589683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18590854 18590933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18592108 18592180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (606 nt):
ATGATCACCGAGACCGCGGCGGAGCCTACGGTCCCTGCAGTGCCTGCTGCTGAGGAGGCCACCGAAGCTC
GGGGACGCGAGGAGCCGGCGTGGCCCTGGAAAGACGCCCCGATCCGGACGCTGGTGCAGCGCATCCACCA
GCTGCAGGCTGAGCGCGCGCAGGGCTTCCGCCGACTGGAGGAGTGGTTGGCGCCGGTGCAGGGCCTGAGA
GCCTGGGGGCGCGGCCTCAGGGTCCCCACATGCCGCAGAGGCCACCGCCAGTACCTGCGCAGCGGCCCTG
ACTACGACTTCGCGCGCTACCGGAGCACAGTGCACGGGGTGACCCAGGCCTTCGCCGCCGCCTCGCGGGA
GGTGCTGGCGGTGGAAGCAGAGCTGGGCGGGCCTCGCAGGCAGCCGCTGCTCGCCGGCCACGTGCGCAGC
CTGCAGGAGCTGGAGCAGACGCGGCTGGGCACGGTGGCCCTGCTGCAGTTGATGGAGACGCCAGAGCTGG
CGGGGCAGGAGGACGCTGTACGGATGCAGCAGCTGAAAATGAAGGTAATTAAAACCATGGAGGCGATCAG
CGAGGTTCTCCAGGACCTTAGGTTTGATGCGGAATCTGCCGAGTGA

Translation (201 aa):
MITETAAEPTVPAVPAAEEATEARGREEPAWPWKDAPIRTLVQRIHQLQAERAQGFRRLEEWLAPVQGLR
AWGRGLRVPTCRRGHRQYLRSGPDYDFARYRSTVHGVTQAFAAASREVLAVEAELGGPRRQPLLAGHVRS
LQELEQTRLGTVALLQLMETPELAGQEDAVRMQQLKMKVIKTMEAISEVLQDLRFDAESAE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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