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Report for CCDS93344.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93344.1 Public Homo sapiens 3 POPDC2 24 110 108 CCDS HistoryNCBI Gene:64091Re-query CCDS DB by CCDS ID:93344.1Re-query CCDS DB by GeneID:64091See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93344.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000341124.9 ENSP00000340753.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000341124.9Link to Ensembl Protein Viewer:ENSP00000340753.5Re-query CCDS DB by Nucleotide ID:ENST00000341124Re-query CCDS DB by Protein ID:ENSP00000340753
Original member Current member EBI ENST00000493094.6 ENSP00000417250.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000493094.6Link to Ensembl Protein Viewer:ENSP00000417250.1Re-query CCDS DB by Nucleotide ID:ENST00000493094Re-query CCDS DB by Protein ID:ENSP00000417250
Original member Current member NCBI NM_001369919.2 NP_001356848.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001369919.2Link to Protein Sequence:NP_001356848.1Re-query CCDS DB by Nucleotide ID:NM_001369919Re-query CCDS DB by Protein ID:NP_001356848Link to BLAST:NP_001356848.1

Chromosomal Locations for CCDS 93344.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 119648162 119648668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 119654505 119654613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 119659933 119660423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1107 nt):
ATGAGCGCCAACAGCAGCAGAGTGGGCCAGCTTCTCTTGCAGGGTTCAGCGTGCATTAGGTGGAAGCAGG
ATGTGGAAGGGGCTGTCTACCACCTAGCCAACTGCCTCTTACTCCTGGGCTTCATGGGGGGCAGTGGGGT
GTATGGATGCTTCTATCTTTTTGGCTTCCTGAGTGCAGGTTACCTGTGCTGCGTGCTGTGGGGCTGGTTC
AGTGCCTGTGGCCTGGACATTGTTCTTTGGAGCTTCCTGCTGGCTGTGGTCTGCCTGCTCCAGCTGGCAC
ACCTGGTATACCGCCTGCGTGAGGACACCCTCCCTGAGGAGTTTGACCTCCTCTACAAGACGCTGTGCCT
GCCCTTGCAGGTGCCCCTACAGACATACAAGGAGATTGTTCACTGCTGCGAGGAGCAGGTCTTAACTCTG
GCCACTGAACAGACCTATGCTGTGGAGGGTGAGACACCCATCAACCGCCTGTCCCTGCTGCTCTCTGGCC
GGGTTCGTGTGAGCCAGGATGGGCAGTTTCTGCACTACATCTTTCCATACCAGTTCATGGACTCTCCTGA
GTGGGAATCACTACAGCCTTCTGAGGAGGGGGTGTTCCAGGTCACTCTGACTGCTGAGACCTCATGTAGC
TACATTTCCTGGCCCCGGAAAAGTCTCCATCTTCTTCTGACCAAAGAGCGATACATCTCCTGCCTCTTCT
CGGCTCTGCTGGGATATGACATCTCAGAGAAGCTCTACACTCTCAATGACAAGCTCTTTGCTAAGTTTGG
GCTGCGCTTTGACATCCGCCTTCCCAGCCTCTACCATGTCCTGGGTCCCACTGCTGCAGATGCTGGACCA
GAGTCCGAGAAGGGTGATGAGGAAGTCTGTGAGCCAGCTGTGTCCCCTCCTCAGGCCACACCCACCTCTC
TCCAGCAAACACCCCCTTGTTCTACCCCTCCAGCTACCACCAACTTTCCTGCACCTCCTACCCGGGCCAG
GTTGTCCAGGCCAGACAGTGGCATACTGGGTGAGGACTCCACCAGTCTGGTGCTGGAGGATTTTGAGGAG
GTGTCAGGATCAGAATCGTTTATGGATTATAGGAGTGATGGGGAGTACATGAGGTGA

Translation (368 aa):
MSANSSRVGQLLLQGSACIRWKQDVEGAVYHLANCLLLLGFMGGSGVYGCFYLFGFLSAGYLCCVLWGWF
SACGLDIVLWSFLLAVVCLLQLAHLVYRLREDTLPEEFDLLYKTLCLPLQVPLQTYKEIVHCCEEQVLTL
ATEQTYAVEGETPINRLSLLLSGRVRVSQDGQFLHYIFPYQFMDSPEWESLQPSEEGVFQVTLTAETSCS
YISWPRKSLHLLLTKERYISCLFSALLGYDISEKLYTLNDKLFAKFGLRFDIRLPSLYHVLGPTAADAGP
ESEKGDEEVCEPAVSPPQATPTSLQQTPPCSTPPATTNFPAPPTRARLSRPDSGILGEDSTSLVLEDFEE
VSGSESFMDYRSDGEYMR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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