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Report for CCDS13074.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13074.1 Public Homo sapiens 20 RNF24 24 110 108 CCDS HistoryNCBI Gene:11237Re-query CCDS DB by CCDS ID:13074.1Re-query CCDS DB by GeneID:11237See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13074.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000336095.10 ENSP00000336753.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000336095.10Link to Ensembl Protein Viewer:ENSP00000336753.5Re-query CCDS DB by Nucleotide ID:ENST00000336095Re-query CCDS DB by Protein ID:ENSP00000336753
Original member Current member EBI ENST00000358395.11 ENSP00000351166.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000358395.11Link to Ensembl Protein Viewer:ENSP00000351166.6Re-query CCDS DB by Nucleotide ID:ENST00000358395Re-query CCDS DB by Protein ID:ENSP00000351166
Original member Current member NCBI NM_001134337.3 NP_001127809.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001134337.3Link to Protein Sequence:NP_001127809.1Re-query CCDS DB by Nucleotide ID:NM_001134337Re-query CCDS DB by Protein ID:NP_001127809Link to BLAST:NP_001127809.1
Original member Current member NCBI NM_001321749.2 NP_001308678.1 Accepted alive Link to Nucleotide Sequence:NM_001321749.2Link to Protein Sequence:NP_001308678.1Re-query CCDS DB by Nucleotide ID:NM_001321749Re-query CCDS DB by Protein ID:NP_001308678Link to BLAST:NP_001308678.1
Original member Current member NCBI NM_007219.5 NP_009150.1 Accepted alive Link to Nucleotide Sequence:NM_007219.5Link to Protein Sequence:NP_009150.1Re-query CCDS DB by Nucleotide ID:NM_007219Re-query CCDS DB by Protein ID:NP_009150Link to BLAST:NP_009150.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001127809.1 148 Q9Y225-1 148 100% 0 0
NP_001308678.1 148 Q9Y225-1 148 100% 0 0
NP_009150.1 148 Q9Y225-1 148 100% 0 0

Chromosomal Locations for CCDS 13074.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 3934063 3934201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3934994 3935073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3945177 3945218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3948237 3948279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3963875 3964017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (447 nt):
ATGAGCTCGGATTTCCCACATTACAACTTCAGGATGCCTAATATTGGATTCCAGAATCTGCCTCTCAACA
TATATATTGTGGTTTTTGGTACTGCTATATTTGTCTTCATCCTTAGTTTACTCTTCTGTTGCTACTTGAT
TAGGCTAAGACATCAAGCACACAAAGAATTTTATGCCTACAAACAGGTTATATTAAAAGAGAAAGTAAAA
GAATTGAATTTACATGAGCTCTGTGCAGTGTGCCTAGAAGACTTCAAGCCTCGAGATGAGTTGGGGATTT
GCCCATGTAAGCACGCCTTCCACAGAAAGTGCCTTATTAAGTGGCTGGAGGTTCGTAAAGTGTGTCCCCT
GTGCAACATGCCAGTTCTACAGCTGGCCCAGTTGCACAGTAAGCAGGACCGTGGACCCCCTCAGGGGCCC
CTTCCTGGGGCAGAGAACATTGTATAG

Translation (148 aa):
MSSDFPHYNFRMPNIGFQNLPLNIYIVVFGTAIFVFILSLLFCCYLIRLRHQAHKEFYAYKQVILKEKVK
ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQLHSKQDRGPPQGP
LPGAENIV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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