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Report for CCDS46034.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46034.1 Public Homo sapiens 19 VSTM2B 24 110 108 CCDS HistoryNCBI Gene:342865Re-query CCDS DB by CCDS ID:46034.1Re-query CCDS DB by GeneID:342865See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46034.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000335523.8 ENSP00000335038.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000335523.8Link to Ensembl Protein Viewer:ENSP00000335038.6Re-query CCDS DB by Nucleotide ID:ENST00000335523Re-query CCDS DB by Protein ID:ENSP00000335038
Original member Current member NCBI NM_001146339.2 NP_001139811.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001146339.2Link to Protein Sequence:NP_001139811.1Re-query CCDS DB by Nucleotide ID:NM_001146339Re-query CCDS DB by Protein ID:NP_001139811Link to BLAST:NP_001139811.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139811.1 285 A6NLU5 285 100% 0 0

Chromosomal Locations for CCDS 46034.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 29526584 29526665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29527211 29527395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29528433 29528462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29529819 29530290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29563846 29563934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (858 nt):
ATGGAACAGCGGAACCGGCTCGGTGCCCTCGGATACCTGCCGCCTCTGCTGCTGCATGCCCTGCTGCTCT
TCGTGGCCGACGCTGCATTCACAGAAGTCCCCAAAGATGTGACAGTACGGGAGGGAGACGACATCGAAAT
GCCCTGCGCGTTCCGGGCCAGCGGAGCCACCTCGTATTCGCTGGAGATTCAGTGGTGGTACCTCAAGGAG
CCACCCCGGGAGCTGCTGCACGAGCTGGCGCTCAGCGTGCCGGGCGCCCGGAGCAAGGTAACAAATAAGG
ATGCAACTAAAATCAGCACCGTACGCGTCCAGGGCAATGACATCTCACACCGGCTTCGGCTGTCTGCCGT
GCGGCTGCAGGACGAGGGCGTGTACGAGTGCCGCGTGTCGGACTACAGCGACGACGACACGCAGGAGCAC
AAGGCCCAGGCGATGCTGCGCGTGCTCTCGCGCTTCGCGCCGCCCAACATGCAGGCCGCCGAGGCCGTGT
CCCACATCCAGAGCAGCGGCCCGCGTCGCCACGGCCCAGCCAGCGCCGCCAACGCCAACAACGCGGGCGC
CGCGAGCCGTACCACCTCCGAGCCCGGCCGCGGCGACAAGAGCCCGCCGCCCGGGAGCCCTCCCGCCGCC
ATCGATCCCGCAGTCCCCGAGGCCGCGGCAGCCTCGGCGGCCCACACGCCCACCACCACAGTCGCGGCAG
CTGCTGCTGCCTCGTCAGCGTCGCCGCCATCGGGACAGGCGGTCCTGCTGCGCCAGAGGCACGGCTCGGG
CACCGGCCGTAGCTACACCACAGACCCACTCTTGTCCCTGCTCCTGTTAGCTCTGCATAAGTTCCTGCGC
CTGCTCTTGGGACATTGA

Translation (285 aa):
MEQRNRLGALGYLPPLLLHALLLFVADAAFTEVPKDVTVREGDDIEMPCAFRASGATSYSLEIQWWYLKE
PPRELLHELALSVPGARSKVTNKDATKISTVRVQGNDISHRLRLSAVRLQDEGVYECRVSDYSDDDTQEH
KAQAMLRVLSRFAPPNMQAAEAVSHIQSSGPRRHGPASAANANNAGAASRTTSEPGRGDKSPPPGSPPAA
IDPAVPEAAAASAAHTPTTTVAAAAAASSASPPSGQAVLLRQRHGSGTGRSYTTDPLLSLLLLALHKFLR
LLLGH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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