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Report for CCDS6332.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6332.1 Public Homo sapiens 8 MRPL13 24 110 108 CCDS HistoryNCBI Gene:28998Re-query CCDS DB by CCDS ID:6332.1Re-query CCDS DB by GeneID:28998See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6332.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000306185.8 ENSP00000306548.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000306185.8Link to Ensembl Protein Viewer:ENSP00000306548.3Re-query CCDS DB by Nucleotide ID:ENST00000306185Re-query CCDS DB by Protein ID:ENSP00000306548
Original member Current member NCBI NM_014078.6 NP_054797.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014078.6Link to Protein Sequence:NP_054797.2Re-query CCDS DB by Nucleotide ID:NM_014078Re-query CCDS DB by Protein ID:NP_054797Link to BLAST:NP_054797.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_054797.2 178 Q9BYD1 178 100% 0 0

Chromosomal Locations for CCDS 6332.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 120396104 120396125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 120413991 120414112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 120419852 120419938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 120425306 120425366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 120432030 120432123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 120443185 120443308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 120445068 120445094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (537 nt):
ATGTCGAGTTTCTCTAGGGCGCCCCAGCAATGGGCCACTTTTGCTAGAATATGGTATCTCTTAGATGGGA
AAATGCAGCCACCTGGCAAACTTGCTGCTATGGCATCTATAAGACTTCAGGGATTACATAAACCTGTGTA
CCATGCACTGAGTGACTGTGGGGATCATGTTGTTATAATGAACACAAGACACATTGCATTTTCTGGAAAC
AAATGGGAACAAAAAGTATACTCTTCGCATACTGGCTACCCAGGTGGATTTAGACAAGTAACAGCTGCTC
AGCTTCACCTGAGGGATCCAGTGGCAATTGTAAAACTAGCTATTTATGGCATGCTGCCAAAAAACCTTCA
CAGAAGAACAATGATGGAAAGGTTGCATCTTTTTCCAGATGAGTATATTCCAGAAGATATTCTTAAGAAT
TTAGTAGAGGAGCTTCCTCAACCACGAAAAATACCTAAACGTCTAGATGAGTACACACAAGAAGAAATAG
ACGCCTTCCCAAGATTGTGGACTCCACCTGAAGATTATCGGCTATAA

Translation (178 aa):
MSSFSRAPQQWATFARIWYLLDGKMQPPGKLAAMASIRLQGLHKPVYHALSDCGDHVVIMNTRHIAFSGN
KWEQKVYSSHTGYPGGFRQVTAAQLHLRDPVAIVKLAIYGMLPKNLHRRTMMERLHLFPDEYIPEDILKN
LVEELPQPRKIPKRLDEYTQEEIDAFPRLWTPPEDYRL


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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