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Report for CCDS6200.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6200.1 Public Homo sapiens 8 CPA6 24 110 108 CCDS HistoryNCBI Gene:57094Re-query CCDS DB by CCDS ID:6200.1Re-query CCDS DB by GeneID:57094See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6200.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000297770.10 ENSP00000297770.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000297770.10Link to Ensembl Protein Viewer:ENSP00000297770.4Re-query CCDS DB by Nucleotide ID:ENST00000297770Re-query CCDS DB by Protein ID:ENSP00000297770
Original member Current member NCBI NM_020361.5 NP_065094.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020361.5Link to Protein Sequence:NP_065094.3Re-query CCDS DB by Nucleotide ID:NM_020361Re-query CCDS DB by Protein ID:NP_065094Link to BLAST:NP_065094.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065094.3 437 Q8N4T0-1 437 100% 0 0

Chromosomal Locations for CCDS 6200.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 67422504 67422691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 67428047 67428131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 67434038 67434240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 67483768 67483858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 67484679 67484789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 67506787 67506888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 67509517 67509618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 67511541 67511655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 67517923 67518047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 67624176 67624251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 67746014 67746129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1314 nt):
ATGAAGTGTCTCGGGAAGCGCAGGGGCCAGGCAGCTGCTTTCCTGCCTCTTTGCTGGCTCTTTTTGAAGA
TTCTGCAACCGGGGCACAGCCACCTTTATAACAACCGCTATGCTGGTGATAAAGTGATAAGATTTATTCC
CAAAACAGAAGAGGAAGCATATGCACTGAAGAAAATATCCTATCAACTTAAGGTGGACCTGTGGCAGCCC
AGCAGTATCTCCTATGTATCAGAGGGAACAGTTACTGATGTCCATATCCCCCAAAATGGTTCCCGAGCCC
TGTTAGCCTTCTTACAGGAAGCCAACATCCAGTACAAGGTCCTCATAGAAGATCTTCAGAAAACACTGGA
GAAGGGAAGCAGCTTGCACACCCAGAGAAACCGAAGATCCCTCTCTGGATATAATTATGAAGTTTATCAC
TCCTTAGAAGAAATTCAAAATTGGATGCATCATCTGAATAAAACTCACTCAGGCCTCATTCACATGTTCT
CTATTGGAAGATCATATGAGGGAAGATCTCTTTTTATTTTAAAGCTGGGCAGACGATCACGACTCAAAAG
AGCTGTTTGGATAGACTGTGGTATTCATGCAAGAGAATGGATTGGTCCTGCCTTTTGTCAGTGGTTTGTA
AAAGAAGCTCTTCTAACATATAAGAGTGACCCAGCCATGAGAAAAATGTTGAATCATCTATATTTCTATA
TCATGCCTGTGTTTAACGTCGATGGATACCATTTTAGTTGGACCAATGATCGATTTTGGAGAAAAACAAG
GTCAAGGAACTCAAGGTTTCGCTGCCGTGGAGTGGATGCCAATAGAAACTGGAAAGTGAAGTGGTGTGAT
GAAGGAGCTTCTATGCACCCTTGTGATGACACATACTGTGGCCCTTTTCCAGAATCTGAGCCGGAAGTGA
AGGCTGTAGCTAACTTCCTTCGAAAACACAGAAAGCACATTAGGGCTTATCTCTCCTTTCATGCATATGC
TCAGATGTTACTGTATCCCTATTCTTACAAATATGCAACAATTCCCAATTTTAGATGTGTGGAATCTGCA
GCTTATAAAGCTGTGAATGCACTTCAGTCAGTATACGGGGTACGATACAGATATGGACCAGCCTCCACAA
CGTTGTATGTGAGCTCTGGTAGCTCAATGGATTGGGCCTACAAAAATGGAATACCTTATGCATTTGCTTT
CGAACTACGTGACACTGGATATTTTGGATTTTTACTCCCAGAGATGCTCATCAAACCCACCTGTACAGAA
ACTATGCTGGCTGTGAAAAATATCACAATGCACCTGCTAAAGAAATGTCCCTGA

Translation (437 aa):
MKCLGKRRGQAAAFLPLCWLFLKILQPGHSHLYNNRYAGDKVIRFIPKTEEEAYALKKISYQLKVDLWQP
SSISYVSEGTVTDVHIPQNGSRALLAFLQEANIQYKVLIEDLQKTLEKGSSLHTQRNRRSLSGYNYEVYH
SLEEIQNWMHHLNKTHSGLIHMFSIGRSYEGRSLFILKLGRRSRLKRAVWIDCGIHAREWIGPAFCQWFV
KEALLTYKSDPAMRKMLNHLYFYIMPVFNVDGYHFSWTNDRFWRKTRSRNSRFRCRGVDANRNWKVKWCD
EGASMHPCDDTYCGPFPESEPEVKAVANFLRKHRKHIRAYLSFHAYAQMLLYPYSYKYATIPNFRCVESA
AYKAVNALQSVYGVRYRYGPASTTLYVSSGSSMDWAYKNGIPYAFAFELRDTGYFGFLLPEMLIKPTCTE
TMLAVKNITMHLLKKCP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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