NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS3805.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3805.1 Public Homo sapiens 4 TKTL2 24 110 108 CCDS HistoryNCBI Gene:84076Re-query CCDS DB by CCDS ID:3805.1Re-query CCDS DB by GeneID:84076See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3805.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000280605.5 ENSP00000280605.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000280605.5Link to Ensembl Protein Viewer:ENSP00000280605.3Re-query CCDS DB by Nucleotide ID:ENST00000280605Re-query CCDS DB by Protein ID:ENSP00000280605
Original member Current member NCBI NM_032136.5 NP_115512.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032136.5Link to Protein Sequence:NP_115512.3Re-query CCDS DB by Nucleotide ID:NM_032136Re-query CCDS DB by Protein ID:NP_115512Link to BLAST:NP_115512.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115512.3 626 Q9H0I9 626 100% 0 0

Chromosomal Locations for CCDS 3805.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 163471854 163473734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1881 nt):
ATGATGGCCAACGACGCCAAGCCCGACGTGAAGACCGTGCAGGTGCTGCGGGACACAGCCAACCGCCTGC
GGATCCATTCCATCAGGGCCACGTGTGCCTCTGGTTCTGGCCAGCTCACGTCGTGCTGCAGTGCAGCGGA
GGTCGTGTCTGTCCTCTTCTTCCACACGATGAAGTATAAACAGACAGACCCAGAACACCCGGACAACGAC
CGGTTCATCCTCTCCAGGGGACATGCTGCTCCTATCCTCTATGCTGCTTGGGTGGAGGTGGGTGACATCA
GTGAATCTGACTTGCTGAACCTGAGGAAACTTCACAGCGACTTGGAGAGACACCCTACCCCCCGATTGCC
GTTTGTTGACGTGGCAACAGGGTCCCTAGGTCAGGGATTAGGTACTGCATGTGGAATGGCTTATACTGGC
AAGTACCTTGACAAGGCCAGCTACCGGGTGTTCTGCCTTATGGGAGATGGCGAATCCTCAGAAGGCTCTG
TGTGGGAGGCTTTTGCTTTTGCCTCCCACTACAACTTGGACAATCTCGTGGCGGTCTTCGACGTGAACCG
CTTGGGACAAAGTGGCCCTGCACCCCTTGAGCATGGCGCAGACATCTACCAGAATTGCTGTGAAGCCTTT
GGATGGAATACTTACTTAGTGGATGGCCATGATGTGGAGGCCTTGTGCCAAGCATTTTGGCAAGCAAGTC
AAGTGAAGAACAAGCCTACTGCTATAGTTGCCAAGACCTTCAAAGGTCGGGGTATTCCAAATATTGAGGA
TGCAGAAAATTGGCATGGAAAGCCAGTGCCAAAAGAAAGAGCAGATGCAATTGTCAAATTAATTGAGAGT
CAGATACAGACCAATGAGAATCTCATACCAAAATCGCCTGTGGAAGACTCACCTCAAATAAGCATCACAG
ATATAAAAATGACCTCCCCACCTGCTTACAAAGTTGGTGACAAGATAGCTACTCAGAAAACATATGGTTT
GGCTCTGGCTAAACTGGGCCGTGCAAATGAAAGAGTTATTGTTCTGAGTGGTGACACGATGAACTCCACC
TTTTCTGAGATATTCAGGAAAGAACACCCTGAGCGTTTCATAGAGTGTATTATTGCTGAACAAAACATGG
TAAGTGTGGCACTAGGCTGTGCTACACGTGGTCGAACCATTGCTTTTGCTGGTGCTTTTGCTGCCTTTTT
TACTAGAGCATTCGATCAGCTCCGAATGGGAGCCATTTCTCAAGCCAATATCAACCTTATTGGTTCCCAC
TGTGGGGTATCCACTGGAGAAGATGGAGTCTCCCAGATGGCCCTGGAGGATCTAGCCATGTTCCGAAGCA
TTCCCAATTGTACTGTTTTCTATCCAAGTGATGCCATCTCGACAGAGCATGCTATTTATCTAGCCGCCAA
TACCAAGGGAATGTGCTTCATTCGAACCAGCCAACCAGAAACTGCAGTTATTTATACCCCACAAGAAAAT
TTTGAGATTGGCCAGGCCAAGGTGGTCCGCCACGGTGTCAATGATAAAGTCACAGTAATTGGAGCTGGAG
TTACTCTCCATGAAGCCTTAGAAGCTGCTGACCATCTTTCTCAACAAGGTATTTCTGTCCGTGTCATCGA
CCCATTTACCATTAAACCCCTGGATGCCGCCACCATCATCTCCAGTGCAAAAGCCACAGGCGGCCGAGTT
ATCACAGTGGAGGATCACTACAGGGAAGGTGGCATTGGAGAAGCTGTTTGTGCAGCTGTCTCCAGGGAGC
CTGATATCCTTGTTCATCAACTGGCAGTGTCAGGAGTGCCTCAACGTGGGAAAACTAGTGAATTGCTGGA
TATGTTTGGAATCAGTACCAGACACATTATAGCAGCCGTAACACTTACTTTAATGAAGTAA

Translation (626 aa):
MMANDAKPDVKTVQVLRDTANRLRIHSIRATCASGSGQLTSCCSAAEVVSVLFFHTMKYKQTDPEHPDND
RFILSRGHAAPILYAAWVEVGDISESDLLNLRKLHSDLERHPTPRLPFVDVATGSLGQGLGTACGMAYTG
KYLDKASYRVFCLMGDGESSEGSVWEAFAFASHYNLDNLVAVFDVNRLGQSGPAPLEHGADIYQNCCEAF
GWNTYLVDGHDVEALCQAFWQASQVKNKPTAIVAKTFKGRGIPNIEDAENWHGKPVPKERADAIVKLIES
QIQTNENLIPKSPVEDSPQISITDIKMTSPPAYKVGDKIATQKTYGLALAKLGRANERVIVLSGDTMNST
FSEIFRKEHPERFIECIIAEQNMVSVALGCATRGRTIAFAGAFAAFFTRAFDQLRMGAISQANINLIGSH
CGVSTGEDGVSQMALEDLAMFRSIPNCTVFYPSDAISTEHAIYLAANTKGMCFIRTSQPETAVIYTPQEN
FEIGQAKVVRHGVNDKVTVIGAGVTLHEALEAADHLSQQGISVRVIDPFTIKPLDAATIISSAKATGGRV
ITVEDHYREGGIGEAVCAAVSREPDILVHQLAVSGVPQRGKTSELLDMFGISTRHIIAAVTLTLMK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH