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Report for CCDS11488.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11488.1 Public Homo sapiens 17 HIGD1B 24 110 108 CCDS HistoryNCBI Gene:51751Re-query CCDS DB by CCDS ID:11488.1Re-query CCDS DB by GeneID:51751See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11488.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000253410.3 ENSP00000253410.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000253410.3Link to Ensembl Protein Viewer:ENSP00000253410.1Re-query CCDS DB by Nucleotide ID:ENST00000253410Re-query CCDS DB by Protein ID:ENSP00000253410
Original member Current member EBI ENST00000591513.5 ENSP00000468511.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000591513.5Link to Ensembl Protein Viewer:ENSP00000468511.1Re-query CCDS DB by Nucleotide ID:ENST00000591513Re-query CCDS DB by Protein ID:ENSP00000468511
Original member Current member NCBI NM_001271880.2 NP_001258809.1 Accepted alive Link to Nucleotide Sequence:NM_001271880.2Link to Protein Sequence:NP_001258809.1Re-query CCDS DB by Nucleotide ID:NM_001271880Re-query CCDS DB by Protein ID:NP_001258809Link to BLAST:NP_001258809.1
Original member Current member NCBI NM_016438.4 NP_057522.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016438.4Link to Protein Sequence:NP_057522.1Re-query CCDS DB by Nucleotide ID:NM_016438Re-query CCDS DB by Protein ID:NP_057522Link to BLAST:NP_057522.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258809.1 99 Q9P298 99 100% 0 0
NP_057522.1 99 Q9P298 99 100% 0 0

Chromosomal Locations for CCDS 11488.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 44848153 44848252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44849254 44849388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44850332 44850396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (300 nt):
ATGTCTGCTAACAGACGCTGGTGGGTACCACCTGACGACGAAGACTGTGTGTCTGAGAAGCTCCTGAGGA
AG
ACTCGGGAATCTCCACTGGTGCCTATAGGCTTAGGAGGCTGCTTGGTGGTAGCAGCATACAGGATTTA
C
CGGCTGAGGTCTCGTGGTTCCACCAAGATGTCCATACACCTGATTCACACCCGAGTGGCAGCGCAGGCC
TGT
GCAGTGGGTGCAATCATGCTAGGTGCTGTGTACACAATGTACAGCGATTACGTCAAGAGGATGGCAC
AG
GATGCTGGAGAGAAGTAG


Translation (99 aa):
MSANRRWWVPPDDEDCVSEKLLRKTRESPLVPIGLGGCLVVAAYRIYRLRSRGSTKMSIHLIHTRVAAQA
C
AVGAIML
GAVYTMYSDYVKRMAQDAGEK



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser