NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS49577.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49577.1 Public Mus musculus 15 Lifr 23 108 98 CCDS HistoryNCBI Gene:16880Re-query CCDS DB by CCDS ID:49577.1Re-query CCDS DB by GeneID:16880See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49577.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000164529.8 ENSMUSP00000131434.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164529.8Link to Ensembl Protein Viewer:ENSMUSP00000131434.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164529Re-query CCDS DB by Protein ID:ENSMUSP00000131434
Original member Current member EBI ENSMUST00000226934.1 ENSMUSP00000153968.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226934.1Link to Ensembl Protein Viewer:ENSMUSP00000153968.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226934Re-query CCDS DB by Protein ID:ENSMUSP00000153968
Original member Current member EBI ENSMUST00000227727.1 ENSMUSP00000154181.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227727.1Link to Ensembl Protein Viewer:ENSMUSP00000154181.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227727Re-query CCDS DB by Protein ID:ENSMUSP00000154181
Original member Current member NCBI NM_001113386.1 NP_001106857.1 Accepted alive Link to Nucleotide Sequence:NM_001113386.1Link to Protein Sequence:NP_001106857.1Re-query CCDS DB by Nucleotide ID:NM_001113386Re-query CCDS DB by Protein ID:NP_001106857Link to BLAST:NP_001106857.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001106857.1 719 P42703-2 719 100% 0 0

Chromosomal Locations for CCDS 49577.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 7154409 7154547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 7157156 7157267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 7159391 7159521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 7164529 7164692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 7166883 7167057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 7169012 7169266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 7172856 7172985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 7173391 7173560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 7175560 7175705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 7177432 7177594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 7177904 7177974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 7178799 7179012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 7181853 7182032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 7184717 7184818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 7185067 7185074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2160 nt):
ATGGCAGCTTACTCATGGTGGAGACAGCCATCGTGGATGGTAGACAATAAAAGATCGAGGATGACTCCAA
ACCTGCCATGGCTCCTGTCAGCTCTGACCCTCCTGCATCTGACGATGCATGCAAACGGTCTGAAGAGAGG
GGTACAAGACTTGAAATGCACAACCAACAACATGCGAGTGTGGGACTGCACGTGGCCAGCTCCCCTCGGG
GTCAGCCCTGGAACTGTTAAAGATATTTGCATTAAAGACAGGTTCCATTCTTGTCACCCATTAGAGACAA
CAAACGTTAAAATTCCAGCTCTTTCACCTGGTGATCACGAAGTCACAATAAATTATCTAAATGGCTTTCA
GAGTAAATTCACGTTGAATGAAAAAGATGTCTCTTTAATTCCAGAGACTCCCGAGATCCTGGATTTGTCT
GCTGACTTCTTCACCTCCTCCTTACTACTGAAGTGGAACGACAGAGGGTCTGCTCTGCCTCACCCCTCCA
ATGCCACCTGGGAGATTAAGGTTCTACAGAATCCAAGGACGGAACCAGTAGCACTCGTGTTACTCAACAC
AATGCTGAGTGGTAAAGATACCGTTCAGCACTGGAACTGGACCTCAGACCTGCCCTTGCAATGTGCCACT
CACTCGGTGAGCATTCGATGGCACATTGACTCGCCTCATTTCTCCGGTTACAAAGAGTGGAGTGACTGGA
GCCCGCTGAAGAACATCTCCTGGATTCGTAATACAGAGACTAATGTTTTTCCTCAAGACAAAGTGGTGCT
CGCAGGCTCAAACATGACAATTTGTTGTATGAGTCCAACGAAAGTGCTTTCAGGACAGATCGGCAATACC
CTTCGTCCTCTCATCCATCTGTACGGGCAAACCGTTGCGATCCATATCCTGAACATCCCCGTTTCTGAAA
ACAGTGGCACAAACATCATTTTCATCACAGACGACGATGTGTACGGAACGGTGGTCTTTGCAGGCTATCC
TCCCGATGTTCCTCAGAAGCTGAGCTGTGAGACACATGACTTAAAAGAGATTATATGTAGCTGGAATCCA
GGAAGGATAACTGGACTGGTGGGCCCACGAAATACAGAATACACCCTGTTTGAAAGCATTTCAGGAAAAT
CGGCAGTATTTCACAGGATTGAAGGACTTACAAACGAGACCTACCGGTTAGGCGTGCAAATGCATCCCGG
CCAAGAAATCCATAACTTCACCCTGACTGGTCGCAATCCACTGGGGCAGGCACAGTCAGCAGTGGTCATC
AATGTGACTGAGAGAGTTGCTCCTCATGATCCGACTTCGTTGAAAGTGAAGGACATCAATTCAACAGTTG
TTACATTTTCTTGGTATTTACCAGGAAATTTTACAAAGATTAATCTTTTATGTCAAATTGAAATTTGTAA
AGCTAATTCCAAGAAAGAAGTGAGGAATGCCACAATCAGAGGAGCCGAGGATTCAACTTACCATGTTGCT
GTAGACAAATTAAATCCATACACTGCATACACTTTCCGGGTTCGTTGTTCTTCCAAGACTTTCTGGAAGT
GGAGCAGGTGGAGTGATGAGAAGCGACATCTAACCACAGAAGCCACTCCTTCAAAGGGACCAGACACTTG
GAGAGAGTGGAGTTCTGATGGAAAAAATCTAATCGTCTACTGGAAGCCTTTACCTATTAATGAAGCTAAT
GGAAAAATACTTTCCTACAATGTTTCGTGTTCATTGAACGAGGAGACACAGTCAGTTTTGGAGATCTTCG
ATCCTCAACACAGAGCAGAGATACAGCTTAGTAAAAATGACTACATCATCAGTGTGGTGGCAAGAAATTC
TGCTGGCTCATCACCACCTTCGAAAATAGCTAGTATGGAAATCCCAAATGACGACATCACAGTAGAGCAA
GCGGTGGGGCTAGGAAACAGGATCTTCCTCACCTGGCGTCACGACCCCAACATGACTTGTGACTACGTAA
TTAAATGGTGCAACTCATCTCGGTCTGAGCCCTGCCTCCTGGACTGGAGAAAGGTTCCTTCAAACAGCAC
GGAGACTGTCATAGAGTCTGATCAGTTTCAGCCAGGAGTAAGATACAACTTTTACCTCTATGGGTGCACT
AACCAGGGATACCAACTGTTACGTTCCATAATTGGATACGTAGAAGAACTGGAAGCTTAA

Translation (719 aa):
MAAYSWWRQPSWMVDNKRSRMTPNLPWLLSALTLLHLTMHANGLKRGVQDLKCTTNNMRVWDCTWPAPLG
VSPGTVKDICIKDRFHSCHPLETTNVKIPALSPGDHEVTINYLNGFQSKFTLNEKDVSLIPETPEILDLS
ADFFTSSLLLKWNDRGSALPHPSNATWEIKVLQNPRTEPVALVLLNTMLSGKDTVQHWNWTSDLPLQCAT
HSVSIRWHIDSPHFSGYKEWSDWSPLKNISWIRNTETNVFPQDKVVLAGSNMTICCMSPTKVLSGQIGNT
LRPLIHLYGQTVAIHILNIPVSENSGTNIIFITDDDVYGTVVFAGYPPDVPQKLSCETHDLKEIICSWNP
GRITGLVGPRNTEYTLFESISGKSAVFHRIEGLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQAQSAVVI
NVTERVAPHDPTSLKVKDINSTVVTFSWYLPGNFTKINLLCQIEICKANSKKEVRNATIRGAEDSTYHVA
VDKLNPYTAYTFRVRCSSKTFWKWSRWSDEKRHLTTEATPSKGPDTWREWSSDGKNLIVYWKPLPINEAN
GKILSYNVSCSLNEETQSVLEIFDPQHRAEIQLSKNDYIISVVARNSAGSSPPSKIASMEIPNDDITVEQ
AVGLGNRIFLTWRHDPNMTCDYVIKWCNSSRSEPCLLDWRKVPSNSTETVIESDQFQPGVRYNFYLYGCT
NQGYQLLRSIIGYVEELEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH