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Report for CCDS16300.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16300.1 Public Mus musculus 2 Or5w1b 23 108 98 CCDS HistoryNCBI Gene:258348Re-query CCDS DB by CCDS ID:16300.1Re-query CCDS DB by GeneID:258348See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16300.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099855.1 ENSMUSP00000097441.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099855.1Link to Ensembl Protein Viewer:ENSMUSP00000097441.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000099855Re-query CCDS DB by Protein ID:ENSMUSP00000097441
Original member Current member EBI ENSMUST00000217368.1 ENSMUSP00000149460.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217368.1Link to Ensembl Protein Viewer:ENSMUSP00000149460.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217368Re-query CCDS DB by Protein ID:ENSMUSP00000149460
Original member Current member NCBI NM_146351.2 NP_666463.2 Accepted alive Link to Nucleotide Sequence:NM_146351.2Link to Protein Sequence:NP_666463.2Re-query CCDS DB by Nucleotide ID:NM_146351Re-query CCDS DB by Protein ID:NP_666463Link to BLAST:NP_666463.2

Chromosomal Locations for CCDS 16300.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 87645180 87646121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGCAGTTTGAAAACTTTACCACTGTTTTTACTGAATTTGTCTTGTTAGGACTTTCTGGCAGACAGGATG
TGCAACAGGGCCTCTTTGCATTGTTCTTCCTTGTTTATGGCATAACTGTAATTGCTAATCTAGGGATGAT
CCTGCTGATCAAGTTGGACAGCAGGCTTCACACACCTATGTACTATTTCCTGAGCAATCTGTCCTTCTGT
GACATCTGCTATTCCACCATTATCTCTCCAAAGATGCTGGCTGATTTCTTGTCTACAGAGAAGAGGATTC
CTTATAATTTATGTGCTATTCAACTGTATTTTTTCGGGGCCTTTGCAGATGTAGAATGTCTCATGCTAGC
TGTCATGGCCTATGATCATTATGTTGCCATCTGCAATCCCCTGCTCTATACAATTAAAATGTCCAAGAAG
CTCTGCATCCAGCTTGTGGCTGTTGCCTATGCAATAGGCTTGGTGGATTCAACAATCCACACATCCTGTG
CATTCAGATTGTCCTTCTGCAATTCAAATGTCATCAACCACTTTTTTTGTGACCTTCCACCCTTGCTGGC
CCTCTCCTGCTCAGATACATCCATCAATGAAATAGTGATGTTCACATTAATTGGCTGTGTGGTAGGGTGT
AGCATTGTCACAGTCCTTCTCTCCTACTGCTACATCATTGCAACCATCTGCAGGATGAACTCTGCTGAAG
GCAGGCACAAAGCATTTTCCACCTGTGCTTCCCACCTCATGGCTGTGGCCATTTTTTATGGAACTCTGCT
TTTCATGTATTTCCGACCCAGCTCAAGTTACTCCATGGACACAGACAAAATGGCCTCTGTTTTCTACACA
GTTGTGATTCCTATGTTAAACCCACTCATCTACAGTTTGAGAAATAAGGATGTGAAGGGGGCTCTGAAGA
AGGCAATCAATATTAACTTGTGGCCTGGGTGA

Translation (313 aa):
MQFENFTTVFTEFVLLGLSGRQDVQQGLFALFFLVYGITVIANLGMILLIKLDSRLHTPMYYFLSNLSFC
DICYSTIISPKMLADFLSTEKRIPYNLCAIQLYFFGAFADVECLMLAVMAYDHYVAICNPLLYTIKMSKK
LCIQLVAVAYAIGLVDSTIHTSCAFRLSFCNSNVINHFFCDLPPLLALSCSDTSINEIVMFTLIGCVVGC
SIVTVLLSYCYIIATICRMNSAEGRHKAFSTCASHLMAVAIFYGTLLFMYFRPSSSYSMDTDKMASVFYT
VVIPMLNPLIYSLRNKDVKGALKKAININLWPG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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