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Report for CCDS22871.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22871.2 Public Mus musculus 9 Or7e175 23 108 98 CCDS HistoryNCBI Gene:258550Re-query CCDS DB by CCDS ID:22871.2Re-query CCDS DB by GeneID:258550See the combined annotation on chromosome 9 in Sequence Viewer

Public Note for CCDS 22871.2
The coding region has been updated to extend the N-terminus to one that is supported by available conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 22871.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000213024.2 ENSMUSP00000154723.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213024.2Link to Ensembl Protein Viewer:ENSMUSP00000154723.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213024Re-query CCDS DB by Protein ID:ENSMUSP00000154723
Original member Current member NCBI NM_146557.2 NP_666768.2 Accepted alive Link to Nucleotide Sequence:NM_146557.2Link to Protein Sequence:NP_666768.2Re-query CCDS DB by Nucleotide ID:NM_146557Re-query CCDS DB by Protein ID:NP_666768Link to BLAST:NP_666768.2

Chromosomal Locations for CCDS 22871.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 20129146 20129174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 20137147 20138089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (972 nt):
ATGACTCAACAAAGAATAAGCTTAAATAAGTGTCCAAACAACACAGAAGCACAGAATCTACCAGTTGTCT
CACAGTTCCATCTCATGAGCCTCTCAGAGAACGTAGAAGTACAGCCTTTCCTACTTGTGCTGTTTTTATC
CTTCTACATGGTCACAGTGCTTGGAAACCTGCTCATCATTCTGGCCGTGTGCTCTGACTTCCACCTCCAT
ACCCCCATGTATTTCTTTCTCTCCAACCTTTCCTGGTCTGACATTTGTTTGATCTCCACTATAGTCCCAA
GGATGATTTGGGATATTGGAACTCAAAGCAGAGTCATCTCCTATGTGAGCTGCCTAACACAGATGTCCAT
GTTTATACTTTTTGCATGTATGGATAGTATGCTTCTGACTGTAATGGCCTATGATAGGTTTGTAGCCATC
TGTCACCCCCTGCATTACAAAATCATTATGAATCCTAACCTCTGTGCATTCTTACTTTTAGCATCTGTTT
TGGCCAGTCTTGTGGACTCTCAGGTGCACAATTTGATTGTGCTACAATTTACACACTTCAGTGGCATGGA
AATCTCTAACTTTTATTGTGATCCTTCCCAACTTCTTAATCTTAACTGTTCTGAAATGTTCACCAAAAGC
ATAGTTATACATTTTATTGGTGTCTTTTTTGGTTTATTTTCAACCACAGGAATTATTTCCTCATACTATA
AAATTATTTCTTCCATCCTGAGAATTCCATCAAAAGATGGAAAGTATAAAGCCTTTTCTACCTGTGGGTC
TCACCTGTCAGTTGTTTGCTTATTTTATGGAACAGCTACTGCAGTATACATTGGTTCAACCTCATCATAT
TCTCCTGAAAACTGTGCAGTTGCTTCACTGATGTACACAGTGGTCATACCTATGCTTAATCCCTTCATCT
ACAGCCTGAGGAACAGGGACATTAAAATTGCCCTACGGAAGCTGCAGCGAAGGGCCATATAA

Translation (323 aa):
MTQQRISLNKCPNNTEAQNLPVVSQFHLMSLSENVEVQPFLLVLFLSFYMVTVLGNLLIILAVCSDFHLH
TPMYFFLSNLSWSDICLISTIVPRMIWDIGTQSRVISYVSCLTQMSMFILFACMDSMLLTVMAYDRFVAI
CHPLHYKIIMNPNLCAFLLLASVLASLVDSQVHNLIVLQFTHFSGMEISNFYCDPSQLLNLNCSEMFTKS
IVIHFIGVFFGLFSTTGIISSYYKIISSILRIPSKDGKYKAFSTCGSHLSVVCLFYGTATAVYIGSTSSY
SPENCAVASLMYTVVIPMLNPFIYSLRNRDIKIALRKLQRRAI


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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