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Report for CCDS80450.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80450.1 Public Mus musculus 5 Ttyh3 23 108 98 CCDS HistoryNCBI Gene:78339Re-query CCDS DB by CCDS ID:80450.1Re-query CCDS DB by GeneID:78339See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80450.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000197452.4 ENSMUSP00000142655.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000197452.4Link to Ensembl Protein Viewer:ENSMUSP00000142655.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000197452Re-query CCDS DB by Protein ID:ENSMUSP00000142655
Original member Current member NCBI NM_001308040.1 NP_001294969.1 Accepted alive Link to Nucleotide Sequence:NM_001308040.1Link to Protein Sequence:NP_001294969.1Re-query CCDS DB by Nucleotide ID:NM_001308040Re-query CCDS DB by Protein ID:NP_001294969Link to BLAST:NP_001294969.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001294969.1 479 Q6P5F7-2 479 100% 0 0

Chromosomal Locations for CCDS 80450.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 140623516 140623531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140627122 140627295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140629382 140629518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140629715 140629807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140631493 140631585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140632188 140632243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140633265 140633340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140633564 140633636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140634759 140634854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140635182 140635402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140635514 140635625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140635897 140636066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140648705 140648827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1440 nt):
ATGGCCGGGGTCAGCTACGCGGCGCCCTGGTGGGTGAGCCTCCTGCACCGGCTGCCGCACTTCGACCTGC
GGTGGGAGGCCACCAGCAGCCAATTCCGGCCCGAGGACGCCGACTACCAGCAGGCGTTGCTGCTGCTGGG
GGCCACCGCCCTGGCCTGCCTGGCCCTAGATCTCCTCTTCCTACTCTTCTATTCCTTCTGGCTGTGCTGC
CGGAGGAGAAAGACAGACGAGCACCTTGATGCAGACTGCTGCTGCACTGCCTGGTGCGTCATCATCACCA
CACTGGTCTGCAGCGCGGGCATTGCAGTGGGATTCTACGGCAACGGCGAGACCAGCGATGGCATTCATCG
AGCCACCTACTCACTACGCCATGCCAACCGCACAGTGGCAGGGGTCCAGGACCGCGTGTGGGACACGGCT
GCCGCCCTGAACCGCACAGCGGAGCCCAACCTGCAGAGCCTGGAGAGGCAGCTGGCTGGGCGGCAGGAGC
CACTGAGGGCTGTGCAGCGGCTGCAGACCCTGCTGGGGACCCTGCTGGGCTACACCGCTGCCATCCCCTT
TTGGAGGAACCCCGGAGTATCGCTGGAGGTGCTAGCTGAACAGGTGGACCTCTATGACTGGTACAGGTGG
CTGGGGTACCTGGGCCTGCTCTTGCTTGATGTTATCATCTGCCTCCTGGTGCTGGTGGGCCTCATCCGAA
GCTCCAAGGGTATCTTGGTTGGGGTCTGCTTGCTGGGTGTCTTGGCCCTGGTCATCAGCTGGGGTGCGCT
CGGCTTGGAGCTGGCTGTGTCTGTGGGCTCCAGCGACTTCTGCGTAGACCCTGACACCTTTGTGACCAAG
ATGGTGGAGGAGCACTCAGTACTGAGTGGGGACATTTTGCAATACTACTTGGCTTGCTCACCCCGTGCCA
CCAACCCCTTCCAGCAGAAGCTGTCGGGCAGCCACAAGGCTCTGGTGGAAATGCAAGATGTTGTCGCGGA
GCTGCTGAGGAACGTCCCCCGGGAGCACCCCGCCACCAAGGATCCCTTGCTCCGAGTCCAGGAGGTGCTA
AATGGAACGGAAGTGAATCTCCAGCACCTCACCGCCCTGGTGGACTGCCGCAGCTTGCACCTGGACTACG
TGCAGGCTCTGACAGGCTTCTGCTATGATGGTGTGGAGGGCCTCATCTACCTGGCCCTCTTCTCCTTTGT
CACAGCCCTCATGTTCAGCTCCATCGTCTGCAGCATCCCACACACCTGGCAGCAGAAGAGAGGTCCAGAT
GACGATGGGGAGGAAGAGACTGCGCCAGGGCCGCGGCAGGCACATGACAGCCTTTACCGAGTGCACATGC
CCAGTTTGTACAGCTGCGGAAGCAGCTATGGCAGCGAAGCCAGCATCCCAGCCGCTGCCCACACCGTCAG
CAATGCCCCAGTCACCGAGTACATTACACCTCCAGCATGA

Translation (479 aa):
MAGVSYAAPWWVSLLHRLPHFDLRWEATSSQFRPEDADYQQALLLLGATALACLALDLLFLLFYSFWLCC
RRRKTDEHLDADCCCTAWCVIITTLVCSAGIAVGFYGNGETSDGIHRATYSLRHANRTVAGVQDRVWDTA
AALNRTAEPNLQSLERQLAGRQEPLRAVQRLQTLLGTLLGYTAAIPFWRNPGVSLEVLAEQVDLYDWYRW
LGYLGLLLLDVIICLLVLVGLIRSSKGILVGVCLLGVLALVISWGALGLELAVSVGSSDFCVDPDTFVTK
MVEEHSVLSGDILQYYLACSPRATNPFQQKLSGSHKALVEMQDVVAELLRNVPREHPATKDPLLRVQEVL
NGTEVNLQHLTALVDCRSLHLDYVQALTGFCYDGVEGLIYLALFSFVTALMFSSIVCSIPHTWQQKRGPD
DDGEEETAPGPRQAHDSLYRVHMPSLYSCGSSYGSEASIPAAAHTVSNAPVTEYITPPA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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