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Report for CCDS40317.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40317.1 Public Mus musculus 8 Rbpms 23 108 98 CCDS HistoryNCBI Gene:19663Re-query CCDS DB by CCDS ID:40317.1Re-query CCDS DB by GeneID:19663See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 40317.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053251.11 ENSMUSP00000055813.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053251.11Link to Ensembl Protein Viewer:ENSMUSP00000055813.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000053251Re-query CCDS DB by Protein ID:ENSMUSP00000055813
Original member Current member EBI ENSMUST00000182987.7 ENSMUSP00000138483.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000182987.7Link to Ensembl Protein Viewer:ENSMUSP00000138483.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000182987Re-query CCDS DB by Protein ID:ENSMUSP00000138483
Original member Current member EBI ENSMUST00000191473.6 ENSMUSP00000140387.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000191473.6Link to Ensembl Protein Viewer:ENSMUSP00000140387.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000191473Re-query CCDS DB by Protein ID:ENSMUSP00000140387
Original member Current member NCBI NM_001042674.2 NP_001036139.1 Accepted alive Link to Nucleotide Sequence:NM_001042674.2Link to Protein Sequence:NP_001036139.1Re-query CCDS DB by Nucleotide ID:NM_001042674Re-query CCDS DB by Protein ID:NP_001036139Link to BLAST:NP_001036139.1
Original member Current member NCBI NM_019733.3 NP_062707.1 Accepted alive Link to Nucleotide Sequence:NM_019733.3Link to Protein Sequence:NP_062707.1Re-query CCDS DB by Nucleotide ID:NM_019733Re-query CCDS DB by Protein ID:NP_062707Link to BLAST:NP_062707.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001036139.1 197 Q9WVB0-1 197 100% 0 0
NP_062707.1 197 Q9WVB0-1 197 100% 0 0

Chromosomal Locations for CCDS 40317.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 33795088 33795150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33806717 33806850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33834304 33834454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33862986 33863048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33864333 33864371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33866327 33866404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33929476 33929541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (594 nt):
ATGAACGGCGGCGGCAAAGCCGAGAAGGAGAACACCCCGAGCGAGGCCAACCTTCAGGAGGAGGAGGTCC
GGACCCTATTTGTCAGCGGTCTGCCTCTGGACATCAAGCCCCGAGAGCTGTACCTGCTCTTCAGACCATT
CAAGGGCTATGAAGGTTCTCTCATAAAGCTCACATCTAAACAGCCCGTAGGCTTTGTCAGTTTTGACAGT
CGCTCAGAAGCAGAGGCCGCAAAGAACGCTTTGAACGGCATCCGCTTCGATCCTGAAATCCCGCAAACGC
TACGACTAGAGTTTGCTAAGGCAAACACGAAGATGGCCAAGAACAAACTCGTAGGGACTCCAAACCCCAG
TACTCCTCTGCCCAACACTGTACCTCAGTTCATTGCCAGGGAGCCATATGAGCTCACAGTACCTGCACTT
TACCCCAGTAGCCCTGAAGTTTGGGCCCCGTACCCTCTGTACCCAGCGGAGTTAGCGCCTGCTCTTCCTC
CTCCTGCCGCTTTCACCTACCCCGCTTCACTGCATGCCCAGATGCGCTGGATCCCTCCCTCCGAGGCCAC
TTCCCAGGGCTGGAAGTCCCGGCAGTTCTGCTGA

Translation (197 aa):
MNGGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDS
RSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPLPNTVPQFIAREPYELTVPAL
YPSSPEVWAPYPLYPAELAPALPPPAAFTYPASLHAQMRWIPPSEATSQGWKSRQFC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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