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Report for CCDS88584.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88584.1 Public Mus musculus 14 Gm2237 23 108 98 CCDS HistoryNCBI Gene:100039441Re-query CCDS DB by CCDS ID:88584.1Re-query CCDS DB by GeneID:100039441See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88584.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170694.8 ENSMUSP00000133164.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170694.8Link to Ensembl Protein Viewer:ENSMUSP00000133164.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170694Re-query CCDS DB by Protein ID:ENSMUSP00000133164
Current member NCBI NM_001374120.1 NP_001361049.1 Accepted alive Link to Nucleotide Sequence:NM_001374120.1Link to Protein Sequence:NP_001361049.1Re-query CCDS DB by Nucleotide ID:NM_001374120Re-query CCDS DB by Protein ID:NP_001361049Link to BLAST:NP_001361049.1

Chromosomal Locations for CCDS 88584.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 19564906 19564933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 19567485 19567667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 19568344 19568475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 19569426 19569588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 19570321 19570450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (636 nt):
ATGTTTTCCTGGCTGCTCAGGCTATTTCAGAAAGAGAATGTCGATGAAGGAGAGACCAGACCAACAGAGA
AGGAAGAGGGAATCCTTTCTCATGAAAAAGGAAGAAGGAAATGGTTCTGGAGAAGGCACAGGTCTGCTAG
AAATACTTCAACCCAAAATTCCAAAATGACTAAGAAGAGATCAAAAATAAATGAACTAGAAGAACTGAAA
TTGGATATGAGGAAGATCAGCAATGACATGGAGGAAATGTGTGGAATCCTGAACCTTTACATGTATGAGG
ATTTGAACTACAGGATGAACACTGAATTCAACATCATTAAATCACAACATGAGAAGACAATGTTGGATAT
GAATAAAATGATCCAGTCAATAATTGGTTCCATGCAGTACTCTAAGGAACTGATAGAAGATAACTATTCC
TACAGCATTAAGGAGGACCACCTCCTCCGTGAGTGCACTCAACTCCACGAAAACGTAAGGATATTACTGA
ATGAGAACAGAAGGCTGCTGGTGGAGCAGGCTGGCCACAAGTGTCCTGTGGGGAAGAAAAGAGGTTCTCT
GAGGAGGCCAGCAAGAACATCTGTGTCCCAAGTGCCAAGGAACAGCAGTCCAGCAGAAAGCAGAACATGG
CACTGA

Translation (211 aa):
MFSWLLRLFQKENVDEGETRPTEKEEGILSHEKGRRKWFWRRHRSARNTSTQNSKMTKKRSKINELEELK
LDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYS
YSIKEDHLLRECTQLHENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSVSQVPRNSSPAESRTW
H


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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