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Report for CCDS53223.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53223.1 Public Mus musculus X Phf8 23 108 98 CCDS HistoryNCBI Gene:320595Re-query CCDS DB by CCDS ID:53223.1Re-query CCDS DB by GeneID:320595See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53223.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046950.12 ENSMUSP00000040765.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046950.12Link to Ensembl Protein Viewer:ENSMUSP00000040765.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000046950Re-query CCDS DB by Protein ID:ENSMUSP00000040765
Original member Current member EBI ENSMUST00000168501.7 ENSMUSP00000127653.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168501.7Link to Ensembl Protein Viewer:ENSMUSP00000127653.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168501Re-query CCDS DB by Protein ID:ENSMUSP00000127653
Original member Current member NCBI NM_001113354.1 NP_001106825.1 Accepted alive Link to Nucleotide Sequence:NM_001113354.1Link to Protein Sequence:NP_001106825.1Re-query CCDS DB by Nucleotide ID:NM_001113354Re-query CCDS DB by Protein ID:NP_001106825Link to BLAST:NP_001106825.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001106825.1 1023 Q80TJ7-1 1023 100% 0 0

Chromosomal Locations for CCDS 53223.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 151522479 151522576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151547395 151547480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151547815 151547923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151550831 151550991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151552486 151552627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151554134 151554320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151555973 151556135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151565372 151565459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151565959 151566065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151567652 151567743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151570342 151570431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151572366 151572668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151573413 151573516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151597301 151597479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151597900 151597985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151598503 151598636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151599274 151599584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151620864 151620959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151625192 151625301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151630150 151630486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151631339 151631427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3072 nt):
ATGGCCTCGGTGCCTGTGTATTGCCTCTGTCGACTGCCTTATGATGTGACCCGCTTCATGATCGAGTGTG
ACATGTGCCAGGACTGGTTTCACGGCAGTTGTGTTGGTGTTGAGGAGGAGAAGGCTGCTGATATTGATCT
TTACCACTGCCCTAACTGTGAGGTCTTACATGGACCTTCCATTATGAAAAAACGTCGTGGATCTTCCAAA
GGACATGATAATCACAAGGGGAAGCCACTGAAGACTGGAAGCTCTATGTTTATCCGAGAACTTCGGGGCA
GAACTTTTGACAGCTCAGATGAAGTGATTCTGAAGCCCACTGGAAGTCAGCTGACTGTGGAATTCTTGGA
AGAGAATAGCTTCAGCGTGCCTATCCTTGTCTTGAAGAAGGATGGGTTGGGGATGACATTACCCTCTCCA
TCATTCACTGTGAGGGATGTGGAACACTATGTTGGTTCTGACAAAGAGATTGATGTGATTGATGTGGCCC
GCCAGGCTGACTGCAAGATGAAACTCGGTGATTTTGTCAAATACTATTACAGTGGGAAGAGGGAAAAAGT
CCTCAATGTCATTAGTTTGGAATTCTCCGATACCAGGCTTTCAAACCTCGTGGAAACACCCAGGATTGTT
CGCAAGCTGTCATGGGTGGAGAACTTGTGGCCAGAGGAATGTGTCTTTGAGAGACCCAATGTGCAGAAGT
ACTGCCTCATGAGTGTGCGGGATAGCTATACAGATTTTCACATTGACTTTGGTGGGACCTCAGTTTGGTA
CCATGTGCTTAAGGGTGAGAAGATCTTCTACCTGATCCGCCCAACAAATGCTAATCTGACTCTCTTTGAG
TGCTGGAGTAGCTCCTCCAATCAGAACGAGATGTTCTTTGGTGACCAAGTGGAAAAGTGCTACAAGTGTT
CTGTGAAGCAAGGACAAACACTGTTTATTCCTACAGGATGGATACATGCTGTGTTAACACCCGTGGACTG
CTTAGCATTCGGAGGGAACTTCTTACACAGTCTTAACATTGAAATGCAACTCAAGGCTTATGAAATTGAG
AAGAGGCTGAGCACAGCAGACCTTTTCAAGTTTCCCAACTTCGAGACCATCTGTTGGTATGTGGGAAAAC
ATATTCTGGACATCTTTCGAGGCTTACGAGAAAATAGAAGACACCCTGCCTCCTACCTGGTCCATGGTGG
TAAAGCTCTGAACTTGGCATTTAGAGCTTGGACAAAGAAAGAAGCTTTGCCAGACCACGAGGATGAGATC
CCAGAGACAGTGCGGACTGTACAGCTCATTAAAGATCTGGCTAGGGAGATCCGTCTGGTTGAAGACATCT
TCCAACAGAACGTTGGGAAGACGAGCAATATCTTTGGGCTGCAGAGGATCTTCCCAGCTGGCTCCATCCC
CTTAACCAAGCCAGCCCATTCCACTTCAGTATCCATGTCCAAGCTGTCACTGCCCTCCAAAAATGGTTCA
AAGAAGAAAGGCCTGAAGCCCAAGGATATCTTCAAGAAGGCAGAGCGAAAGGGCAAGCAGAGTTCAGCCT
TGGGGCCTGCTGGCCAGTTGAGCTATAATCTCATGGACCCATACAGTCATCAGGCACTGAAGACAGGCCC
TTCCCAGAAAGCAAAGTTCAACATGAGTGGTACCAGCTTGAATGATTCAGATGATGACTCAGCAGACATG
GACCTTGATGGCAGTGAGAACCCTCTGGCCCTGTTGATGGCTAATGGCAGTACGAAGAGGATGAAGAGTG
TATCCAAATCTCGGAGAGCCAAAATTGCAAAGAAGGTAGACAGTGCAAGACTGGTAGCAGAACAGGTCAT
GGGAGATGAATTTGACTTGGATTCAGATGATGAGCTGCAGATTGACGAGAGATTGGGAAAGGAAAAGGCG
AACCTGTTAATAAGATCAAAATTTCCCCGGAAGTTGCCCCGTGCAAAACCTTGCTCTGACCCCAACCGAA
TTCGTGAACCTGGAGAAGTTGAGTTTGACATTGAGGAGGACTATACCACAGATGAGGACATGGTGGAAGG
GGTTGAAAGCAAGCTTGGGAATGGGAGTGGAGCCGGTGGAATTCTTGATCTACTTAAGGCCAGCAGGCAG
GTGGGGGGACCTGACTATGCTGCCCTCACTGAGGCCCCAGCCTCCCCCAGCACTCAAGAGGCCATCCAGG
GCATGTTGTGTATGGCCAACCTGCAGTCCTCATCATCCTCACCAGCTACCTCCAGTCTGCAGGCTTGGTG
GACTGGAGGGCAAGAAAGAAGCAGCGGGAGCTCCAGCAGTGGCCTGGGCACTGTGTCTAGTAGTCCTGCT
TCCCAGCGCACCCCAGGGAAGCGGCCCATCAAGAGGCCAGCATACTGGAAAAACGAGAGTGAAGAGGAGG
AGAATGCCAGTCTTGATGAGCAAGACAGCTTGGGAGCATGCTTCAAGGATGCTGAGTATATCTATCCATC
TCTGGAGTCTGATGATGATGACCCTGCTTTGAAATCTCGACCCAAGAAAAAGAAGAATTCAGATGATGCT
CCATGGAGTCCTAAAGCCCGTGTGACTCCAACCCTACCCAAGCAGGACCGTCCTGTTCGTGAGGGGACCA
GAGTTGCCTCCATTGAGACAGGCTTGGCTGCAGCAGCTGCAAAGCTTGCCCAGCAGGAGCTACAAAAGGC
CCAAAAGAAGAAATATATCAAGAAGAAGCCTTTGCTGAAGGAGGTAGAACAGCCGCGCCCTCAAGATTCC
AATCCCATCATGACAATGCCTGCACCAACTGTGGCTACAACACCCCAGCCTGACACCTCCTCCTCACCCC
AGCCACCTCCTGAGCCTAAACAAGAGGCTCTGTCAGGAAGTCTTGCTGACCATGAGTACACTGCTCGTCC
CAATGCCTTTGGCATGGCTCAGGCAAATCGCAGCACCACACCCATGGCCCCTGGAGTCTTCCTCACCCAG
CGGCGCCCTTCAGTTGGTTCCCAGAGCAGTCAGGCAGGACAAGGAAAGCGTCCTAAAAAGGGCCTGGCCA
CAGCAAAGCAGAGACTCGGCCGCATCCTGAAAATCCACAGAAATGGCAAGTTACTTCTGTGA

Translation (1023 aa):
MASVPVYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHGPSIMKKRRGSSK
GHDNHKGKPLKTGSSMFIRELRGRTFDSSDEVILKPTGSQLTVEFLEENSFSVPILVLKKDGLGMTLPSP
SFTVRDVEHYVGSDKEIDVIDVARQADCKMKLGDFVKYYYSGKREKVLNVISLEFSDTRLSNLVETPRIV
RKLSWVENLWPEECVFERPNVQKYCLMSVRDSYTDFHIDFGGTSVWYHVLKGEKIFYLIRPTNANLTLFE
CWSSSSNQNEMFFGDQVEKCYKCSVKQGQTLFIPTGWIHAVLTPVDCLAFGGNFLHSLNIEMQLKAYEIE
KRLSTADLFKFPNFETICWYVGKHILDIFRGLRENRRHPASYLVHGGKALNLAFRAWTKKEALPDHEDEI
PETVRTVQLIKDLAREIRLVEDIFQQNVGKTSNIFGLQRIFPAGSIPLTKPAHSTSVSMSKLSLPSKNGS
KKKGLKPKDIFKKAERKGKQSSALGPAGQLSYNLMDPYSHQALKTGPSQKAKFNMSGTSLNDSDDDSADM
DLDGSENPLALLMANGSTKRMKSVSKSRRAKIAKKVDSARLVAEQVMGDEFDLDSDDELQIDERLGKEKA
NLLIRSKFPRKLPRAKPCSDPNRIREPGEVEFDIEEDYTTDEDMVEGVESKLGNGSGAGGILDLLKASRQ
VGGPDYAALTEAPASPSTQEAIQGMLCMANLQSSSSSPATSSLQAWWTGGQERSSGSSSSGLGTVSSSPA
SQRTPGKRPIKRPAYWKNESEEEENASLDEQDSLGACFKDAEYIYPSLESDDDDPALKSRPKKKKNSDDA
PWSPKARVTPTLPKQDRPVREGTRVASIETGLAAAAAKLAQQELQKAQKKKYIKKKPLLKEVEQPRPQDS
NPIMTMPAPTVATTPQPDTSSSPQPPPEPKQEALSGSLADHEYTARPNAFGMAQANRSTTPMAPGVFLTQ
RRPSVGSQSSQAGQGKRPKKGLATAKQRLGRILKIHRNGKLLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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