NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS22189.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22189.1 Public Mus musculus 8 Gpat4 23 108 98 CCDS HistoryNCBI Gene:102247Re-query CCDS DB by CCDS ID:22189.1Re-query CCDS DB by GeneID:102247See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22189.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000167004.2 ENSMUSP00000127325.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167004.2Link to Ensembl Protein Viewer:ENSMUSP00000127325.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167004Re-query CCDS DB by Protein ID:ENSMUSP00000127325
Original member Current member NCBI NM_018743.4 NP_061213.2 Accepted alive Link to Nucleotide Sequence:NM_018743.4Link to Protein Sequence:NP_061213.2Re-query CCDS DB by Nucleotide ID:NM_018743Re-query CCDS DB by Protein ID:NP_061213Link to BLAST:NP_061213.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061213.2 456 Q8K2C8 456 100% 0 0

Chromosomal Locations for CCDS 22189.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 23174552 23174660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 23175340 23175419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 23175508 23175636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 23179415 23179500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 23179769 23179824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 23180101 23180216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 23180633 23180726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 23180860 23180949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 23181773 23181847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 23182663 23182963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 23184529 23184598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 23190716 23190880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1371 nt):
ATGTTCCTGTTGCTACCTTTTGATAGCTTGATTGTCAACCTCCTGGGTATCTCCCTGACCGTCCTCTTCA
CCCTGCTGCTTGTTTTCATCATCGTCCCTGCCATCTTTGGAGTGTCCTTTGGTATCCGAAAGCTCTACAT
GAAAACACTGCTAAAGATCTTTGCGTGGGCCACCCTGAGAATGGAGAGAGGAGCCAAGGAGAGGAACCAC
CAGCTGTACAAGCCCTACACCAACGGAATCATTGCAAAAGATCCCACTTCTCTGGAAGAAGAAATCAAAG
AAATTCGTCGAAGTGGTAGTAGTAAAGCTCTGGATAAGACACCCGAGTTCGAGCTCTCTGACATCTTCTA
CTTTTGCCGGAAAGGAATGGAGACTATCATGGATGATGAAGTGACAAAGAGATTCTCGGCAGAGGAGCTG
GAGTCCTGGAACTTGCTGAGCAGAACCAATTACAACTTCCAATACATAAGCCTGCGGCTTACCATCCTCT
GGGGCTTAGGAGTGCTGATTCGGTATTGCTTCCTCCTGCCACTCAGGATTGCGCTGGCATTCACGGGGAT
TGGCCTCTTGGTAGTGGGAACTACTATGGTTGGATACCTGCCAAATGGGAGATTTAAGGAGTTTTTGAGT
AAACACGTTCACTTAATGTGCTACCGTATCTGTGTGCGAGCCCTGACGGCCATCATTACGTACCACAACA
GGAAAAACAGACCAAGAAATGGTGGCATCTGTGTGGCTAACCATACATCCCCCATTGATGTGATCATCTT
GGCCAGCGACGGCTACTACGCCATGGTGGGACAGGTTCACGGGGGCCTTATGGGTGTGATTCAGAGAGCA
ATGGTGAAAGCCTGCCCCCATGTCTGGTTTGAGCGTTCTGAGGTGAAAGATCGCCACCTGGTGGCTAAGA
GGCTGACTGAGCATGTCCAGGATAAAAGCAAGCTGCCCATCCTCATCTTCCCAGAAGGAACCTGCATCAA
TAACACATCAGTGATGATGTTCAAGAAGGGAAGCTTTGAAATTGGAGCCACTGTTTACCCTGTGGCTATC
AAGTATGACCCTCAGTTTGGTGACGCCTTCTGGAACAGCAGCAAGTATGGCATGGTGACGTACCTTCTGA
GGATGATGACCAGTTGGGCCATTGTCTGCAGCGTTTGGTACCTGCCTCCTATGACTCGAGAGAAAGATGA
AGATGCTGTGCAGTTTGCTAACAGAGTGAAGTCTGCCATTGCCCGGCAGGGAGGATTGGTAGACCTGCTG
TGGGACGGTGGATTGAAGAGAGAAAAGGTGAAGGACACATTCAAGGAGGAGCAGCAGAAGCTATATAGCA
AGATGATAGTCGGAAACCATGAGGACCGCAGCCGGTCCTGA

Translation (456 aa):
MFLLLPFDSLIVNLLGISLTVLFTLLLVFIIVPAIFGVSFGIRKLYMKTLLKIFAWATLRMERGAKERNH
QLYKPYTNGIIAKDPTSLEEEIKEIRRSGSSKALDKTPEFELSDIFYFCRKGMETIMDDEVTKRFSAEEL
ESWNLLSRTNYNFQYISLRLTILWGLGVLIRYCFLLPLRIALAFTGIGLLVVGTTMVGYLPNGRFKEFLS
KHVHLMCYRICVRALTAIITYHNRKNRPRNGGICVANHTSPIDVIILASDGYYAMVGQVHGGLMGVIQRA
MVKACPHVWFERSEVKDRHLVAKRLTEHVQDKSKLPILIFPEGTCINNTSVMMFKKGSFEIGATVYPVAI
KYDPQFGDAFWNSSKYGMVTYLLRMMTSWAIVCSVWYLPPMTREKDEDAVQFANRVKSAIARQGGLVDLL
WDGGLKREKVKDTFKEEQQKLYSKMIVGNHEDRSRS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH