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Report for CCDS36422.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36422.1 Public Mus musculus 12 Cys1 23 108 98 CCDS HistoryNCBI Gene:12879Re-query CCDS DB by CCDS ID:36422.1Re-query CCDS DB by GeneID:12879See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 36422.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074163.12 ENSMUSP00000073796.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074163.12Link to Ensembl Protein Viewer:ENSMUSP00000073796.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000074163Re-query CCDS DB by Protein ID:ENSMUSP00000073796
Original member Current member EBI ENSMUST00000163514.8 ENSMUSP00000126787.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163514.8Link to Ensembl Protein Viewer:ENSMUSP00000126787.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000163514Re-query CCDS DB by Protein ID:ENSMUSP00000126787
Original member Current member EBI ENSMUST00000173145.7 ENSMUSP00000133902.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000173145.7Link to Ensembl Protein Viewer:ENSMUSP00000133902.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000173145Re-query CCDS DB by Protein ID:ENSMUSP00000133902
Original member Current member EBI ENSMUST00000156453.9 ENSMUSP00000134522.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000156453.9Link to Ensembl Protein Viewer:ENSMUSP00000134522.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000156453Re-query CCDS DB by Protein ID:ENSMUSP00000134522
Original member Current member EBI ENSMUST00000186602.6 ENSMUSP00000140759.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000186602.6Link to Ensembl Protein Viewer:ENSMUSP00000140759.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000186602Re-query CCDS DB by Protein ID:ENSMUSP00000140759
Original member Current member EBI ENSMUST00000189849.6 ENSMUSP00000141121.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000189849.6Link to Ensembl Protein Viewer:ENSMUSP00000141121.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000189849Re-query CCDS DB by Protein ID:ENSMUSP00000141121
Original member Current member NCBI NM_001004455.2 NP_001004455.2 Accepted alive Link to Nucleotide Sequence:NM_001004455.2Link to Protein Sequence:NP_001004455.2Re-query CCDS DB by Nucleotide ID:NM_001004455Re-query CCDS DB by Protein ID:NP_001004455Link to BLAST:NP_001004455.2
Original member Current member NCBI NM_001161807.1 NP_001155279.1 Accepted alive Link to Nucleotide Sequence:NM_001161807.1Link to Protein Sequence:NP_001155279.1Re-query CCDS DB by Nucleotide ID:NM_001161807Re-query CCDS DB by Protein ID:NP_001155279Link to BLAST:NP_001155279.1
Original member Current member NCBI NM_138686.3 NP_619627.3 Accepted alive Link to Nucleotide Sequence:NM_138686.3Link to Protein Sequence:NP_619627.3Re-query CCDS DB by Nucleotide ID:NM_138686Re-query CCDS DB by Protein ID:NP_619627Link to BLAST:NP_619627.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001004455.2 145 Q8R4T1 145 99.3103% 0 1
NP_001155279.1 145 Q8R4T1 145 99.3103% 0 1
NP_619627.3 145 Q8R4T1 145 99.3103% 0 1

Chromosomal Locations for CCDS 36422.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 24667127 24667232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 24669698 24669750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 24680630 24680908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (438 nt):
ATGGGCAGCGGCAGCAGCCGGAGCGGCCGGATCCCGAGGCGGCGACGCAGCCCTGACAGGCGTCAGACAG
GCCCGGGAGAGACAGCCTCGGAGGGCGGCACGGCTGACCAGGCCCGGACGGCCGCGGGGCAGGAGGAGAG
CGGCCGCGACCCCCGACCCGCGACGCCCTCCGGTGGCCGGGAGGAGACCCTACGCCTGCTGGATCAGTTG
CTGGCCGAGTCGGAGGCCTGGGGGCCCCAGGAGCTGACCCCACGAGGCCCCGCCCGGCTCGCACCCGCGG
TGTCCCCAGAGAAGAAGGTTAAAGGCAACCCTGAAGACAGCTGTGCCTCTGAAGCCCCGGGGAACAGCCC
CAAGAGACCCGAGGGGCAGTCGGCCATCTCCTATGACTACTCAGAAGAGGAGCTCATGGCGAGCATTGAG
CGGGAGTACTGCCGCTGA

Translation (145 aa):
MGSGSSRSGRIPRRRRSPDRRQTGPGETASEGGTADQARTAAGQEESGRDPRPATPSGGREETLRLLDQL
LAESEAWGPQELTPRGPARLAPAVSPEKKVKGNPEDSCASEAPGNSPKRPEGQSAISYDYSEEELMASIE
REYCR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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