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Report for CCDS16460.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16460.1 Public Mus musculus 2 Lrrc4c 23 108 98 CCDS HistoryNCBI Gene:241568Re-query CCDS DB by CCDS ID:16460.1Re-query CCDS DB by GeneID:241568See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16460.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000162807.8 ENSMUSP00000125218.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162807.8Link to Ensembl Protein Viewer:ENSMUSP00000125218.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000162807Re-query CCDS DB by Protein ID:ENSMUSP00000125218
Original member Current member EBI ENSMUST00000135431.7 ENSMUSP00000130984.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000135431.7Link to Ensembl Protein Viewer:ENSMUSP00000130984.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000135431Re-query CCDS DB by Protein ID:ENSMUSP00000130984
Original member Current member EBI ENSMUST00000059049.7 ENSMUSP00000131795.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059049.7Link to Ensembl Protein Viewer:ENSMUSP00000131795.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000059049Re-query CCDS DB by Protein ID:ENSMUSP00000131795
Original member Current member NCBI NM_001289742.1 NP_001276671.1 Accepted alive Link to Nucleotide Sequence:NM_001289742.1Link to Protein Sequence:NP_001276671.1Re-query CCDS DB by Nucleotide ID:NM_001289742Re-query CCDS DB by Protein ID:NP_001276671Link to BLAST:NP_001276671.1
Original member Current member NCBI NM_001289743.1 NP_001276672.1 Accepted alive Link to Nucleotide Sequence:NM_001289743.1Link to Protein Sequence:NP_001276672.1Re-query CCDS DB by Nucleotide ID:NM_001289743Re-query CCDS DB by Protein ID:NP_001276672Link to BLAST:NP_001276672.1
Original member Current member NCBI NM_001289744.1 NP_001276673.1 Accepted alive Link to Nucleotide Sequence:NM_001289744.1Link to Protein Sequence:NP_001276673.1Re-query CCDS DB by Nucleotide ID:NM_001289744Re-query CCDS DB by Protein ID:NP_001276673Link to BLAST:NP_001276673.1
Original member Current member NCBI NM_001363047.1 NP_001349976.1 Accepted alive Link to Nucleotide Sequence:NM_001363047.1Link to Protein Sequence:NP_001349976.1Re-query CCDS DB by Nucleotide ID:NM_001363047Re-query CCDS DB by Protein ID:NP_001349976Link to BLAST:NP_001349976.1
Original member Current member NCBI NM_001363048.1 NP_001349977.1 Accepted alive Link to Nucleotide Sequence:NM_001363048.1Link to Protein Sequence:NP_001349977.1Re-query CCDS DB by Nucleotide ID:NM_001363048Re-query CCDS DB by Protein ID:NP_001349977Link to BLAST:NP_001349977.1
Original member Current member NCBI NM_001363049.1 NP_001349978.1 Accepted alive Link to Nucleotide Sequence:NM_001363049.1Link to Protein Sequence:NP_001349978.1Re-query CCDS DB by Nucleotide ID:NM_001363049Re-query CCDS DB by Protein ID:NP_001349978Link to BLAST:NP_001349978.1
Original member Current member NCBI NM_178725.6 NP_848840.3 Accepted alive Link to Nucleotide Sequence:NM_178725.6Link to Protein Sequence:NP_848840.3Re-query CCDS DB by Nucleotide ID:NM_178725Re-query CCDS DB by Protein ID:NP_848840Link to BLAST:NP_848840.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276671.1 640 Q8C031 640 100% 0 0
NP_001276672.1 640 Q8C031 640 100% 0 0
NP_001276673.1 640 Q8C031 640 100% 0 0
NP_001349976.1 640 Q8C031 640 100% 0 0
NP_001349977.1 640 Q8C031 640 100% 0 0
NP_001349978.1 640 Q8C031 640 100% 0 0
NP_848840.3 640 Q8C031 640 100% 0 0

Chromosomal Locations for CCDS 16460.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 97629031 97630953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1923 nt):
ATGTTGAACAAGATGACCTTACATCCACAGCAGATAATGATAGGTCCTAGGTTTAACAGGGCCCTATTTG
ACCCCCTGCTTGTGGTGCTGTTGGCTCTTCAACTTCTTGTGGTGGCTGGTTTGGTTCGTGCTCAAACCTG
CCCTTCAGTGTGCTCTTGTAGCAACCAGTTCAGCAAGGTGATTTGTGTTCGGAAAAACCTTCGTGAAGTT
CCGGATGGCATCTCCACCAACACAAGGCTGCTGAACCTCCATGAGAACCAAATCCAGATCATTAAAGTGA
ACAGCTTCAAGCATTTGAGGCACTTAGAAATCCTCCAGTTGAGCAGGAACCATATTCGAACCATTGAAAT
CGGGGCCTTCAATGGTCTGGCCAACCTCAACACCCTGGAACTCTTTGACAATCGTCTTACTACCATACCG
AATGGAGCTTTTGTATATTTGTCTAAACTGAAGGAGCTCTGGTTGAGGAACAACCCTATTGAAAGCATCC
CTTCCTATGCTTTTAACAGAATCCCTTCTTTGCGCCGCCTGGACTTAGGGGAATTGAAAAGGCTTTCATA
CATCTCAGAAGGTGCCTTTGAAGGTCTGTCCAACTTGAGGTATTTGAACCTTGCCATGTGCAACCTTCGG
GAAATCCCTAACCTCACACCACTCATCAAACTTGACGAGCTAGATCTTTCTGGGAACCATTTGTCTGCAA
TCAGGCCTGGCTCTTTTCAGGGGTTGATGCACCTTCAAAAACTGTGGATGATACAGTCTCAGATTCAAGT
GATTGAACGGAATGCCTTTGATAACCTTCAGTCACTAGTGGAGATAAACTTGGCACACAACAATCTAACA
TTATTGCCTCATGACCTCTTCACACCCTTGCATCATCTAGAGAGGATACACCTCCATCACAACCCGTGGA
ACTGTAACTGTGATATCCTGTGGCTCAGCTGGTGGATAAGAGACATGGCCCCCTCCAACACAGCTTGCTG
TGCCAGGTGTAACACTCCCCCCAACCTGAAAGGGAGGTACATCGGAGAGCTGGACCAGAATTACTTTACA
TGCTATGCTCCCGTAATTGTGGAGCCCCCTGCAGACCTCAATGTCACTGAAGGCATGGCAGCTGAGCTGA
AATGTCGGGCTTCTACGTCCCTGACTTCCGTATCTTGGATTACTCCAAATGGAACAGTCATGACCCACGG
GGCATACAAAGTGCGGATAGCTGTGCTCAGCGACGGTACTTTAAATTTCACAAATGTAACTGTGCAAGAC
ACAGGCATGTACACATGTATGGTGAGTAATTCTGTTGGCAACACCACTGCTTCTGCCACCTTGAATGTTA
CTGCGGCAACCACTACTCCGTTCTCGTACTTTTCAACTGTAACAGTAGAGACTATGGAACCTTCTCAGGA
TGAGGCACGGACCACAGATAACAATGTGGGCCCCACTCCAGTGATCGATTGGGAGACCACCAATGTAACC
ACATCTCTTACGCCACAGAGCACAAGGTCGACAGAAAAAACATTCACCATCCCAGTAACTGACATCAACA
GCGGAATCCCAGGAATTGATGAGGTCATGAAAACAACTAAAATCATTATTGGGTGTTTTGTGGCCATCAC
ACTCATGGCTGCCGTGATGCTGGTCATTTTCTACAAGATGAGGAAACAGCACCATCGGCAAAACCACCAT
GCTCCAACAAGGACTGTTGAAATCATTAACGTGGATGATGAGATCACTGGGGACACGCCCATGGAAAGCC
ACCTGCCCATGCCTGCGATTGAGCATGAGCACCTAAACCACTATAACTCTTACAAATCTCCCTTCAACCA
CACAACAACAGTAAACACAATAAATTCAATACACAGTTCAGTGCATGAACCGTTATTGATCCGAATGAAC
TCTAAAGACAATGTACAAGAGACTCAGATATAA

Translation (640 aa):
MLNKMTLHPQQIMIGPRFNRALFDPLLVVLLALQLLVVAGLVRAQTCPSVCSCSNQFSKVICVRKNLREV
PDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP
NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR
EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT
LLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIRDMAPSNTACCARCNTPPNLKGRYIGELDQNYFT
CYAPVIVEPPADLNVTEGMAAELKCRASTSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQD
TGMYTCMVSNSVGNTTASATLNVTAATTTPFSYFSTVTVETMEPSQDEARTTDNNVGPTPVIDWETTNVT
TSLTPQSTRSTEKTFTIPVTDINSGIPGIDEVMKTTKIIIGCFVAITLMAAVMLVIFYKMRKQHHRQNHH
APTRTVEIINVDDEITGDTPMESHLPMPAIEHEHLNHYNSYKSPFNHTTTVNTINSIHSSVHEPLLIRMN
SKDNVQETQI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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