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Report for CCDS27843.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27843.1 Public Mus musculus 15 Galnt6 23 108 98 CCDS HistoryNCBI Gene:207839Re-query CCDS DB by CCDS ID:27843.1Re-query CCDS DB by GeneID:207839See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27843.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052069.11 ENSMUSP00000056705.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052069.11Link to Ensembl Protein Viewer:ENSMUSP00000056705.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000052069Re-query CCDS DB by Protein ID:ENSMUSP00000056705
Original member Current member EBI ENSMUST00000159715.7 ENSMUSP00000123848.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000159715.7Link to Ensembl Protein Viewer:ENSMUSP00000123848.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000159715Re-query CCDS DB by Protein ID:ENSMUSP00000123848
Original member Current member EBI ENSMUST00000161514.1 ENSMUSP00000124793.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161514.1Link to Ensembl Protein Viewer:ENSMUSP00000124793.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161514Re-query CCDS DB by Protein ID:ENSMUSP00000124793
Original member Current member NCBI NM_001161767.1 NP_001155239.1 Accepted alive Link to Nucleotide Sequence:NM_001161767.1Link to Protein Sequence:NP_001155239.1Re-query CCDS DB by Nucleotide ID:NM_001161767Re-query CCDS DB by Protein ID:NP_001155239Link to BLAST:NP_001155239.1
Original member Current member NCBI NM_001161768.1 NP_001155240.1 Accepted alive Link to Nucleotide Sequence:NM_001161768.1Link to Protein Sequence:NP_001155240.1Re-query CCDS DB by Nucleotide ID:NM_001161768Re-query CCDS DB by Protein ID:NP_001155240Link to BLAST:NP_001155240.1
Original member Current member NCBI NM_172451.3 NP_766039.2 Accepted alive Link to Nucleotide Sequence:NM_172451.3Link to Protein Sequence:NP_766039.2Re-query CCDS DB by Nucleotide ID:NM_172451Re-query CCDS DB by Protein ID:NP_766039Link to BLAST:NP_766039.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001155239.1 622 Q8C7U7 622 100% 0 0
NP_001155240.1 622 Q8C7U7 622 100% 0 0
NP_766039.2 622 Q8C7U7 622 100% 0 0

Chromosomal Locations for CCDS 27843.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 100693353 100693466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100694570 100694722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100696547 100696648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100697119 100697250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100697778 100697978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100699117 100699234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100703348 100703582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100704111 100704260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100714096 100714268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100715928 100716418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1869 nt):
ATGAGGTTGCTACGAAGGCGCCACATGTCCCTGCGCCTCGCCATGCTGGGCAGCGTCTTCATGCTCTTCC
TCTTCATTCGGCAGAAGGATGTAAGCAACCAGGAGCAGGCCATGGAGAAACCGTGGCTGAAGTCCCTGGC
TGGCCAGAAGGACCAGGTCCTGGACTTCATGCTAGGTGCTGTGAACAACATTAGGGACGTCATGCCTAAG
CTGCAGATCCGGGCTCCAGAACCGCCTCAGACTCTGGTCTCCACAAACCACTCCTGCCTGCCCGGGTTCT
ACACCCCTGCTGAGCTGAAACCCTTCTGGGACCGGCCACCTCAAGATCCCAACAGCCCTGGGGCAGATGG
AAAAGCATTTCAGAAGAAAGAATGGACCAATCTAGAGACCAAAGAAAAGGAAGAAGGCTATAAGAAACAC
TGCTTTAATGCATTTGCCAGTGACCGCATCTCCTTGCAGAGGTCCCTGGGGCCAGACACCCGGCCTCCTG
AGTGTGTTGACCAGAAGTTCCGGCGCTGCCCGCCACTGCCCACCACCAGCGTGATCATTGTGTTCCACAA
CGAAGCCTGGTCCACTCTGCTGCGCACAGTATACAGCGTCCTGCACACCAGCCCTGCCATCTTGCTGAAG
GAAATCATCCTCGTGGATGACGCCAGCACAGATGAGCACCTGAAGGAGAGGCTGGAGCAGTACGTTCAGC
AGCTGCAGATCGTGCGCGTGGTTCGGCAGCGGGAGCGGAAGGGGCTCATCACAGCCAGGCTGCTGGGGGC
CAGCGTGGCGCAGGCAGAGGTGCTCACGTTCCTGGACGCCCACTGTGAGTGTTTTCACGGCTGGCTGGAG
CCCCTCCTGGCTCGAATTGCTGAAGACAAGACAGCGGTGGTGAGCCCAGACATCGTCACCATCGACCTTA
ATACCTTCCAATTCTCCAGACCAGTACAGAGAGGCAAAGCCCACAGCCGGGGCAACTTCGACTGGAGCCT
GACCTTCGGCTGGGAAATGCTTCCTGAGCACGAGAAGCAGAGACGCAAGGATGAGACCTACCCCATCAAG
TCCCCGACGTTTGCCGGCGGCCTCTTCTCCATCTCCAAGGCCTACTTTGAGCACATCGGTACCTATGATA
ACCAGATGGAGATCTGGGGAGGGGAGAATGTGGAAATGTCCTTCCGGGTGTGGCAGTGTGGGGGCCAGCT
GGAAATAATCCCCTGCTCGGTGGTCGGCCACGTGTTCCGTACCAAGAGTCCCCACACCTTCCCCAAGGGC
ACCAGTGTCATTGCGCGCAATCAGGTGCGCCTGGCTGAGGTCTGGATGGACGACTATAAGAAGATTTTCT
ACAGGAGAAATCTGCAGGCAGCAAAGATGGTCCAGGAGAACAACTTCGGTGACATCTCGGAGCGACTTCG
GCTCAGGGAGCAGCTACGATGCCACAACTTCTCCTGGTACCTGCACAATGTCTACCCAGAGATGTTTGTC
CCCGACCTGAACCCCACCTTCTATGGAGCCATCAAGAATCTTGGCACCAATCAGTGTTTGGACGTGGGCG
AGAACAACCGGGGAGGAAAGCCTCTCATCATGTATGTCTGCCACAACCTCGGCGGCAATCAGTACTTTGA
GTACACATCACAGAGGGACCTCCGCCACAACATTGGAAAGCAGCTGTGTCTACATGCCAGTGGGAGCACG
CTCGGCCTTAGGAGCTGTCAGTTCGTTGGCAAAAACAGCAGAGTGCCCAAGGACGAGGAGTGGGAATTGA
CCCAGGATCAACTCATCAGAAACTCAGGATCTGGTACCTGCCTGACATCCCAGGACAAAAAGCCAGCCAT
GGCCCCCTGTAATCCCAGGGATCCCTACCAGCTCTGGCTGTTTGTCTAG

Translation (622 aa):
MRLLRRRHMSLRLAMLGSVFMLFLFIRQKDVSNQEQAMEKPWLKSLAGQKDQVLDFMLGAVNNIRDVMPK
LQIRAPEPPQTLVSTNHSCLPGFYTPAELKPFWDRPPQDPNSPGADGKAFQKKEWTNLETKEKEEGYKKH
CFNAFASDRISLQRSLGPDTRPPECVDQKFRRCPPLPTTSVIIVFHNEAWSTLLRTVYSVLHTSPAILLK
EIILVDDASTDEHLKERLEQYVQQLQIVRVVRQRERKGLITARLLGASVAQAEVLTFLDAHCECFHGWLE
PLLARIAEDKTAVVSPDIVTIDLNTFQFSRPVQRGKAHSRGNFDWSLTFGWEMLPEHEKQRRKDETYPIK
SPTFAGGLFSISKAYFEHIGTYDNQMEIWGGENVEMSFRVWQCGGQLEIIPCSVVGHVFRTKSPHTFPKG
TSVIARNQVRLAEVWMDDYKKIFYRRNLQAAKMVQENNFGDISERLRLREQLRCHNFSWYLHNVYPEMFV
PDLNPTFYGAIKNLGTNQCLDVGENNRGGKPLIMYVCHNLGGNQYFEYTSQRDLRHNIGKQLCLHASGST
LGLRSCQFVGKNSRVPKDEEWELTQDQLIRNSGSGTCLTSQDKKPAMAPCNPRDPYQLWLFV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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