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Report for CCDS51659.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51659.1 Public Mus musculus 5 Abhd11 23 108 98 CCDS HistoryNCBI Gene:68758Re-query CCDS DB by CCDS ID:51659.1Re-query CCDS DB by GeneID:68758See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51659.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111216.7 ENSMUSP00000106847.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111216.7Link to Ensembl Protein Viewer:ENSMUSP00000106847.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111216Re-query CCDS DB by Protein ID:ENSMUSP00000106847
Original member Current member EBI ENSMUST00000154469.7 ENSMUSP00000144449.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000154469.7Link to Ensembl Protein Viewer:ENSMUSP00000144449.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000154469Re-query CCDS DB by Protein ID:ENSMUSP00000144449
Original member Current member NCBI NM_001190437.1 NP_001177366.1 Accepted alive Link to Nucleotide Sequence:NM_001190437.1Link to Protein Sequence:NP_001177366.1Re-query CCDS DB by Nucleotide ID:NM_001190437Re-query CCDS DB by Protein ID:NP_001177366Link to BLAST:NP_001177366.1

Chromosomal Locations for CCDS 51659.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 135010094 135010117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135010887 135011060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135011210 135011380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135011484 135011665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135011887 135012019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (684 nt):
ATGGTTCAGAGGACTGGCCGGAGGGTGCTGACGGTGGATGCCCGGAACCACGGTGACAGCCCCCACAGTC
CAGACGCAAGCTATGAGGCCATGAGTCAGGACCTTCAGGGCCTCCTTCCACAGCTGGGTCTGGTGCCCTG
CGTCCTCGTTGGCCACAGCATGGGAGGAAAGACAGCCATGCTCCTGGCACTGCAGAGGCCAGATGTTGTG
GAACGATTGGTTGTTGTAGACATAAGCCCGGTAGGAACCACACCTGGATCACACATTGGAGCCTTCATAG
CAGCCATGAAGGCTGTTGAGATCCCAGAGAAGGTGCCGCACTCCCAAGCCCGAAAACTGGCGGATAAGCA
GCTTAGTTCGGTTGTCAAGGAAGCGGGCATTCGGCAGTTCCTGCTCACTAACCTGGTAGAGGTGGGTGGG
CGATTCTCCTGGAGACTGAACTTGGATACGTTAGCTCAGCACTTGGACAAGATAATGACCTTTCCTCAGC
AACGTGAACCCTACTCGGGGCCAACTCTCTTCCTGCTTGGTGGAAATTCTACATATGTACAACCCAGCCA
CCACTCAGAGATTAGGCGACTCTTCCCTCAAGCCCAGATTCAGACCGTGCCTAACGCTGGCCACTGGGTC
CACAGCGACAAACCCCAAGACTTCATGGATGCTGTCACCAGCTTCTTGGCTTAA

Translation (227 aa):
MVQRTGRRVLTVDARNHGDSPHSPDASYEAMSQDLQGLLPQLGLVPCVLVGHSMGGKTAMLLALQRPDVV
ERLVVVDISPVGTTPGSHIGAFIAAMKAVEIPEKVPHSQARKLADKQLSSVVKEAGIRQFLLTNLVEVGG
RFSWRLNLDTLAQHLDKIMTFPQQREPYSGPTLFLLGGNSTYVQPSHHSEIRRLFPQAQIQTVPNAGHWV
HSDKPQDFMDAVTSFLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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