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Report for CCDS36716.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36716.2 Public Mus musculus 13 Zfp738 23 108 98 CCDS HistoryNCBI Gene:408068Re-query CCDS DB by CCDS ID:36716.2Re-query CCDS DB by GeneID:408068See the combined annotation on chromosome 13 in Sequence Viewer

Public Note for CCDS 36716.2
The coding region has been updated to add an extra 3' exon, as well as to change the first splice donor site. This update extends the CDS from 104-aa to 793-aa and includes a ZNF domain in the last exon, which means that it now has a typical domain structure compared to other zinc finger proteins.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 36716.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000137496.9 ENSMUSP00000121275.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000137496.9Link to Ensembl Protein Viewer:ENSMUSP00000121275.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000137496Re-query CCDS DB by Protein ID:ENSMUSP00000121275
Original member Current member NCBI NM_001001187.3 NP_001001187.2 Accepted alive Link to Nucleotide Sequence:NM_001001187.3Link to Protein Sequence:NP_001001187.2Re-query CCDS DB by Nucleotide ID:NM_001001187Re-query CCDS DB by Protein ID:NP_001001187Link to BLAST:NP_001001187.2

Chromosomal Locations for CCDS 36716.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 67669489 67671611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 67672998 67673093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 67673562 67673688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 67683403 67683438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2382 nt):
ATGGAGGTTGGTGCAGGGAGCAGCGCCATCTTTCAGGAAATGCTGTCATTCAGGGATGTGGCCATTGATT
TCTCTGCAGAGGAGTGGGAATGCCTGGAGCCTGCTCAGTTGGATCTGTACAGGGACGTGATGCTGGAGAA
TTACAGCAACCTTGTGTTCCTGGGTCTTGCTTCGTCTAAGCCATATCTGGTCACATGTCTGGAGCAAATA
CAAGAGCCTTCAGATGTGAAAAGAGGAGCGGCTACCTCTATGCTCCCGGAAAGAAAATGCTATAAGTGCA
AAGAGTGTGGCAAAGTCTCTGAGTGGACAAAAGTGTTTCAAAATCACCAGATGCTTGATTTAGGAATGAA
TTACTACAAGTGTGAAGAATGTGCCAAGTCCTTCCATAGTCCATCATTAAGTTCTGAAGAGAACAGAATT
CATGCAGGAGAAAAACCTTACAAATGTGAAGTTTGTGGCAAGGCCTTCTGCATTCCATTATTACTTTCTA
AACACAAGATAATTCATAAAGGAGAGAATCTCTACAAGTGTGAAGTGTGTGGCAAGGCCTTCCAACATCC
ATCAAGACTTTCCAGACATAAGAAGATTCATTCAGAAGAGAAACCATACAAGTGTGAAGTATGTGGAAAA
GCCTTCCACTTTCCATCATTACTTTTGGTACACAAGAGAGTTCATACAGGAGAGAAACCATACAAGTGTA
CAGTATGTGGCAAAGCCTTCCATTATCCATCAATATTTTCTAAACACAAGCGAATTCATACAGGAGAGAA
ACCATACAAGTGTGAAGAATGTGGCAAGGCCTTCCACATTTCATCATTTCTTTCTAAACACAAAATAATT
CATAGAGGAGAAAAACCCTACAAGTGTGAGGTATGTGGCAAGGCCTTCCATTATCCATCAAGACTTTCCA
ACCATAAGAAAATCCATTCAGGAGAGAAACCATTCAAGTGTGAAGTATGTGGGAAGGCCTTCCGCATTTT
ATCACTCCTTTCTAAGCACAAGATAATTCATACAGAAGAGAATCCTTACAAGTGTGAAGTATGTGGCAAG
GCTTTCGATTATCCCTCAAGACTTTCTAACCATGCAGAAATGCATACAAGAGAGAAACCATACAAGTGTG
AAGTATGTCAAAAGGCTTTCCGTTCTCTGTCATCATTTTCTAAACACAAGAGAATTCATACAAAAGACAA
TTACTATAACAGTGAATTATGTGGCAAGGCCTTCATTTATCCTTCAAGACTTTCTAAACATAAGAAAATT
TGTGCAGGAGAGAAGCCCTACAAGTGTGAAGTATGTGGCAAGGCCTTCCATGTTGCATCACTACTTTCTA
AACACAGGACAATTCATACAGGAGAAAAACTCTATAAGTGTGAAGTATGTGGGAAGGCCTTTTATTATCC
ATCAAGACTTTCCAACCATAAGAAAATTCATACAGGAGAGAAACCATTCCAGTGTGAAGTATGTGGGAAG
GCCTTCTGTTTTCCTTCATCACTATCTAAACACAAGAGAATTCACACAGGAGAGAAACCATACAAATGTA
AAGAGTGTGGAAAGGCCTTCCGCTCTCTGTCCTCACTTTCTAAACACAAGAGAATTCACACAGGAGAGAA
ACCCTACAAATGTGAAGAATGTGGCAAGGCCTTCCATTATCCATCATTACTTTCTAAACACAAGATAATT
CATACAGGAGAAAAACCCTATAAGTGTGATATATGTGACCAGGCGTTTCATGTTCCATCAAAACTTTCTC
ATCACAAAATAATTCATAGAGGAGAAAAACCCCACAAGTGTGAGGTATGTGGCAAGGCCTTCCATTATCC
ATCAAGACTTTCCAACCATAAGAAAATCCATTCAGAAGAGAAACCATACAAGTGTGAAGTATGTGGGAAG
GCCTTCCGCATTTTATCACTCCTTTCTAAGCACAAGATAATTCATACCGAAGAGAATCCTTACAAGTGTG
AAGTATGTGGCAAGGCTTTCGATTATCCCTCAAGACTTTCTACCCATGCAAAAATGCATACAAGAGAGAA
ACCATACAAATGTGAAGTATGTCAAAATGCTTTCCGTTCTCTGTCATCACTTTCTAAACACAAGATAATT
CATAAGGAAGAAAAACCCTACAAGTCTGACATATGTGGCCAGGCGTTCCATGTTCCATCCAAACTTTCTC
ATCACAAAATAATTCAGACAGGAGAAAAACCCTACAAGTGTGAAGTATGTGGCAAGGCCTTCTGCATTCC
ATTATTAGTTTCTAAACACAAGAGAGTTCATACAGGAGAGAATCCCTATAACAGTCAAGTATATAACAAG
GCCTTCATTTATCCTTTAAGACTTTCTAAGCATAAGAAAATTTGTACAAAAGAGAAACCATACAAGTGTT
AA

Translation (793 aa):
MEVGAGSSAIFQEMLSFRDVAIDFSAEEWECLEPAQLDLYRDVMLENYSNLVFLGLASSKPYLVTCLEQI
QEPSDVKRGAATSMLPERKCYKCKECGKVSEWTKVFQNHQMLDLGMNYYKCEECAKSFHSPSLSSEENRI
HAGEKPYKCEVCGKAFCIPLLLSKHKIIHKGENLYKCEVCGKAFQHPSRLSRHKKIHSEEKPYKCEVCGK
AFHFPSLLLVHKRVHTGEKPYKCTVCGKAFHYPSIFSKHKRIHTGEKPYKCEECGKAFHISSFLSKHKII
HRGEKPYKCEVCGKAFHYPSRLSNHKKIHSGEKPFKCEVCGKAFRILSLLSKHKIIHTEENPYKCEVCGK
AFDYPSRLSNHAEMHTREKPYKCEVCQKAFRSLSSFSKHKRIHTKDNYYNSELCGKAFIYPSRLSKHKKI
CAGEKPYKCEVCGKAFHVASLLSKHRTIHTGEKLYKCEVCGKAFYYPSRLSNHKKIHTGEKPFQCEVCGK
AFCFPSSLSKHKRIHTGEKPYKCKECGKAFRSLSSLSKHKRIHTGEKPYKCEECGKAFHYPSLLSKHKII
HTGEKPYKCDICDQAFHVPSKLSHHKIIHRGEKPHKCEVCGKAFHYPSRLSNHKKIHSEEKPYKCEVCGK
AFRILSLLSKHKIIHTEENPYKCEVCGKAFDYPSRLSTHAKMHTREKPYKCEVCQNAFRSLSSLSKHKII
HKEEKPYKSDICGQAFHVPSKLSHHKIIQTGEKPYKCEVCGKAFCIPLLVSKHKRVHTGENPYNSQVYNK
AFIYPLRLSKHKKICTKEKPYKC


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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