NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS22878.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22878.2 Public Mus musculus 9 Zfp846 23 108 98 CCDS HistoryNCBI Gene:244721Re-query CCDS DB by CCDS ID:22878.2Re-query CCDS DB by GeneID:244721See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 22878.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060063.9 ENSMUSP00000051593.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060063.9Link to Ensembl Protein Viewer:ENSMUSP00000051593.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000060063Re-query CCDS DB by Protein ID:ENSMUSP00000051593
Original member Current member EBI ENSMUST00000115557.9 ENSMUSP00000111219.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115557.9Link to Ensembl Protein Viewer:ENSMUSP00000111219.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000115557Re-query CCDS DB by Protein ID:ENSMUSP00000111219
Original member Current member NCBI NM_172919.2 NP_766507.2 Accepted alive Link to Nucleotide Sequence:NM_172919.2Link to Protein Sequence:NP_766507.2Re-query CCDS DB by Nucleotide ID:NM_172919Re-query CCDS DB by Protein ID:NP_766507Link to BLAST:NP_766507.2

Chromosomal Locations for CCDS 22878.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 20587891 20587923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 20588509 20588635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 20590813 20590884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 20591339 20591421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 20593161 20594471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1626 nt):
ATGGTGGCTGATTGCCTGACAAATTGTTACCAGGTCTCAGTAACTTTTGATGATGTGGCTGTGGACTTCA
CCCAAGAAGAATGGATTTTATTGGATCAAGCTCACAGAGACCTCTACAGAGAGGTGATGCTGGAGAACTA
CCAGAACCTGGCCTCAGCAGGATGTGAGGTCATCAAACCCAGTCTGATCTCCTGGTTGGAAGAAGAGGAT
TTGCACAGAGAAGATCTCCAAGAATGGGAAATGCCACTTGGCACCCAAGAGTCACCATTGCATCAGGATT
TTTTGAGGGGACAGACTTCCAGTGGAATACAAACAGGCAGAAGCCACAGTGCACACGAACTCTGCTACTA
CACACAATGTGGGGAAATTTTCAGTGAGCACTCATATTTCAAGACCCATGTGAAAACTCATAGTGCATGG
AACACTGGACATCTCACCCACTCAGATCATGATGTGTCTGCTCAAGTGCACACCATAAAAACGTACCCAT
GTAAGATTTGTGGGAAAGCCTTTGGACGATCTTCAAATCTCAATAGACACCTGCGAAGCCACACTGGAGA
AAAACCCTATGAATGTAAGGAGTGTGGGAAAGCCTTCACTACCTACTCAAGGCTAGTGGAACACTTTAGA
ACTCACACTGGAGAGAAACCATATAAATGTAAGGATTGTGGAAAAGCCTTTGCTAAGCGGTCAGGCCTTA
TAACTCATATATCAACCCATGCTTCAGAGAAACCCTTTGCATGTAAAGAGTGTGGAAAAGCCTTTGCTTC
ATCCCCACGCCTTAGTCAGCATATAAGAATTCACAGTGGAGAGAGACCCTACATATGTAAGGAATGTGGC
CGAGCCTTCCTCACGTCCTCATACCTGCGGAACCATGTAGGAAGAACTCACAGTGGAGAGAGACCCTATA
TATGTGGAGAATGTGGAAAAGCCTTCCATTCTTACTCAAATCTACGTAGACATGTAAGAACTCACAGTGG
AGAAAGACCCTACATATGCAAGGAATGTGGAAAGGCCTTCCTCAATTCCTCATACCTACATAACCATATA
AGAAAAACACACAGTGGAGAGATGCCTCATATATGTGGTGAATGTGGGAAAGTCTTCCATGCTTCCTCCT
ACCTGCGTAGACACTTAAGAACTCACAGTGGAGAGAGACCATGCATATGTAAGGAATGTGGGAAAGCCTT
CCTTAACTCCTCGTACTTACGTAAGCATCTAACCATTCATACAGGAGACAAACCCTACGAGTGTAAGGAA
TGTGGGAAAGCCTACCGTAGGTACAATCTGCTACACGACCACTTAAAAACTCATGCAGTTGAAAAGCCGT
TTGAATGTGATGTATGTGGAAAATCCTTTCAGTATTTCTCATACCTTAATAAACACATTCGTATTCACAC
CGGAACAAAACCTTATAAGTGTAAGTACTGTGGGAAAGATTTCACTACTTCCTCAAGCCGAACTGAACAT
ATCCGAACTCACACTGGTGAGAGGCCCTATGAGTGTTCGGAATGTGAGAAAACCTTCACTTCCTCATCTA
ACCTCATTCACCACGTAAAAATCCACGCTAGAGAGAAACCTTTTGTTGAGAATATAGGGAAGCCTACAGT
AGATTTTCCCTACTAG

Translation (541 aa):
MVADCLTNCYQVSVTFDDVAVDFTQEEWILLDQAHRDLYREVMLENYQNLASAGCEVIKPSLISWLEEED
LHREDLQEWEMPLGTQESPLHQDFLRGQTSSGIQTGRSHSAHELCYYTQCGEIFSEHSYFKTHVKTHSAW
NTGHLTHSDHDVSAQVHTIKTYPCKICGKAFGRSSNLNRHLRSHTGEKPYECKECGKAFTTYSRLVEHFR
THTGEKPYKCKDCGKAFAKRSGLITHISTHASEKPFACKECGKAFASSPRLSQHIRIHSGERPYICKECG
RAFLTSSYLRNHVGRTHSGERPYICGECGKAFHSYSNLRRHVRTHSGERPYICKECGKAFLNSSYLHNHI
RKTHSGEMPHICGECGKVFHASSYLRRHLRTHSGERPCICKECGKAFLNSSYLRKHLTIHTGDKPYECKE
CGKAYRRYNLLHDHLKTHAVEKPFECDVCGKSFQYFSYLNKHIRIHTGTKPYKCKYCGKDFTTSSSRTEH
IRTHTGERPYECSECEKTFTSSSNLIHHVKIHAREKPFVENIGKPTVDFPY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH