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Report for CCDS26203.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26203.1 Public Mus musculus 12 Tex22 23 108 98 CCDS HistoryNCBI Gene:75671Re-query CCDS DB by CCDS ID:26203.1Re-query CCDS DB by GeneID:75671See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26203.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000012355.13 ENSMUSP00000012355.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000012355.13Link to Ensembl Protein Viewer:ENSMUSP00000012355.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000012355Re-query CCDS DB by Protein ID:ENSMUSP00000012355
Original member Current member EBI ENSMUST00000109729.2 ENSMUSP00000105351.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109729.2Link to Ensembl Protein Viewer:ENSMUSP00000105351.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109729Re-query CCDS DB by Protein ID:ENSMUSP00000105351
Original member Current member EBI ENSMUST00000146107.7 ENSMUSP00000116272.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000146107.7Link to Ensembl Protein Viewer:ENSMUSP00000116272.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000146107Re-query CCDS DB by Protein ID:ENSMUSP00000116272
Original member Current member NCBI NM_001361919.1 NP_001348848.1 Accepted alive Link to Nucleotide Sequence:NM_001361919.1Link to Protein Sequence:NP_001348848.1Re-query CCDS DB by Nucleotide ID:NM_001361919Re-query CCDS DB by Protein ID:NP_001348848Link to BLAST:NP_001348848.1
Original member Current member NCBI NM_001361920.1 NP_001348849.1 Accepted alive Link to Nucleotide Sequence:NM_001361920.1Link to Protein Sequence:NP_001348849.1Re-query CCDS DB by Nucleotide ID:NM_001361920Re-query CCDS DB by Protein ID:NP_001348849Link to BLAST:NP_001348849.1
Original member Current member NCBI NM_029381.2 NP_083657.1 Accepted alive Link to Nucleotide Sequence:NM_029381.2Link to Protein Sequence:NP_083657.1Re-query CCDS DB by Nucleotide ID:NM_029381Re-query CCDS DB by Protein ID:NP_083657Link to BLAST:NP_083657.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001348848.1 189 Q9D9U4 189 100% 0 0
NP_001348849.1 189 Q9D9U4 189 100% 0 0
NP_083657.1 189 Q9D9U4 189 100% 0 0

Chromosomal Locations for CCDS 26203.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 113075281 113075436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113088480 113088893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (570 nt):
ATGGACAGCAGGCAACAGCGCCCCCAGAGGAAGACGCTACAGTGGCAGCTTGCTCAAGAGCAAAGACAAC
AGTCACCCCCACAGGGGCTTGCCGTGGCCTCCAGCCAGCCAGACACCAAGAGCAAGCCTCAGGACGACTT
GCAGACCCAAGACTGGGTGTGTGAGCCTCAGGAACTCAGGCGCCCAGGAAGTCGCTGGAACATCAGCATC
GATGAGCGCAGGCGGCTGGCCTTGCAGCGTATGCAGGAGAGGACAGACACAGCCAGGGCCCCATCCGGAG
ACCCGCTGGGCCTGCACCCTGAGGGCCAGCAGACCGAAACCTCCCCATCGACCCAGTCTGTCCCCACCCC
TCCCCTCCAGGCCTGTGAGACTATGGCTGATCCCCTGCAGGACATCGCGCATGTGTTGGCCGAGCTGATG
TCTGAGGGTGTAGAGAGAGATGTACTCATTTCTCAGCCTCTAAGATCTACCGAGAATTCTAATGCCTTCC
AGGACTTCTTGGCCCAGGACGCGCCTCTTTGGAAGGATGAGAATTTTGAGGCCCAGACCTCAAGATGGCC
TCACTCCTAA

Translation (189 aa):
MDSRQQRPQRKTLQWQLAQEQRQQSPPQGLAVASSQPDTKSKPQDDLQTQDWVCEPQELRRPGSRWNISI
DERRRLALQRMQERTDTARAPSGDPLGLHPEGQQTETSPSTQSVPTPPLQACETMADPLQDIAHVLAELM
SEGVERDVLISQPLRSTENSNAFQDFLAQDAPLWKDENFEAQTSRWPHS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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