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Report for CCDS16307.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16307.1 Public Mus musculus 2 Or5w17 23 108 98 CCDS HistoryNCBI Gene:258630Re-query CCDS DB by CCDS ID:16307.1Re-query CCDS DB by GeneID:258630See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16307.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099846.1 ENSMUSP00000097433.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099846.1Link to Ensembl Protein Viewer:ENSMUSP00000097433.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000099846Re-query CCDS DB by Protein ID:ENSMUSP00000097433
Original member Current member NCBI NM_146637.1 NP_666848.1 Accepted alive Link to Nucleotide Sequence:NM_146637.1Link to Protein Sequence:NP_666848.1Re-query CCDS DB by Nucleotide ID:NM_146637Re-query CCDS DB by Protein ID:NP_666848Link to BLAST:NP_666848.1

Chromosomal Locations for CCDS 16307.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 87753056 87753991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGGACAAGGAAAACTGTTCTTCATTACCTGAACTCCTTCTCTTGGAAATTACCAATAACCCTGACATGA
AAGTGCTAATACTTACTGTGTTCTTAGCTATTAATCTTATTGTTCTCATAATTAATATTGGAATGATCAT
CTTTATCAAGATGAATCCACAGCTCCAAACACCAATGTACTTCTTTCTCAGCCACCTCTTTTTCTCTGAC
CTCAGCTACTCCTCTGCAATTGGGTCCAAGATGTTGATAGACATTTTCAGCAAGTACAAAACCATCCCAT
TGTTGTTTGTGCCTTTCGATTCTTTTTTTGTCTGTATCTTTATAGATGTTGAGTGTGTGTTGCCAGCAGT
AATGGCCTTTGATCAGTACAAAGCCATAAGCCACCCCGTGATATATGCCATAGATATGTCCAATAGAGTA
TGCTACCAATTCCTGGCTGGTGTTTACCTTGTAGGAATGACAGATGCTTTGATCCACAGAACATTAACAT
TTTGCTTATGTTTCTGTGAGTCACATGAGATTAATCATTTCTTCTGTGATATCCCTCCTATACTGTTACT
GTCTTGTTTAAATACTCAGTTCAATGAGTTAATGATATTCACTATTTTTGGATTTATTCAGTTGAGCACT
ATTTCAGAAGTCCTTGTCTCCTATTGCTCTATTATCTTATCAGTCTTGAAAATCCATTCTGCCAAGGGAA
GGTTTAAAGCTTTTTCCACCTGCACCTTGCATCTGACTGCTGTTGCAATTTTTCAGGGAACCTTGCTTTT
TACATATTTCCAGCCAAGTACTTCTTATTCCCTAGATCAAGACAAAATGACCTCCTTGTTTTATACTCTG
ATGATTCCCATGCTGAACCCACTGATTTACAGCCTGAGATACAAGGATGTGAAAGAGACCTTGCAAAACC
TGGAAAATAAAAGGTGGTGTAAATAG

Translation (311 aa):
MDKENCSSLPELLLLEITNNPDMKVLILTVFLAINLIVLIINIGMIIFIKMNPQLQTPMYFFLSHLFFSD
LSYSSAIGSKMLIDIFSKYKTIPLLFVPFDSFFVCIFIDVECVLPAVMAFDQYKAISHPVIYAIDMSNRV
CYQFLAGVYLVGMTDALIHRTLTFCLCFCESHEINHFFCDIPPILLLSCLNTQFNELMIFTIFGFIQLST
ISEVLVSYCSIILSVLKIHSAKGRFKAFSTCTLHLTAVAIFQGTLLFTYFQPSTSYSLDQDKMTSLFYTL
MIPMLNPLIYSLRYKDVKETLQNLENKRWCK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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