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Report for CCDS51165.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51165.1 Public Mus musculus 4 Cd72 23 108 98 CCDS HistoryNCBI Gene:12517Re-query CCDS DB by CCDS ID:51165.1Re-query CCDS DB by GeneID:12517See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51165.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098105.3 ENSMUSP00000095709.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098105.3Link to Ensembl Protein Viewer:ENSMUSP00000095709.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000098105Re-query CCDS DB by Protein ID:ENSMUSP00000095709
Original member NCBI NM_001110321.1 NP_001103791.1 Updated not alive Link to Nucleotide Sequence:NM_001110321.1Link to Protein Sequence:NP_001103791.1Re-query CCDS DB by Nucleotide ID:NM_001110321Re-query CCDS DB by Protein ID:NP_001103791
Current member NCBI NM_001110321.2 NP_001103791.1 Accepted alive Link to Nucleotide Sequence:NM_001110321.2Link to Protein Sequence:NP_001103791.1Re-query CCDS DB by Nucleotide ID:NM_001110321Re-query CCDS DB by Protein ID:NP_001103791Link to BLAST:NP_001103791.1

Chromosomal Locations for CCDS 51165.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 43448265 43448415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43449452 43449549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43450070 43450221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43452307 43452639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43453083 43453172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43454242 43454349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43454446 43454527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1014 nt):
ATGGCTGACGCTATCACGTATGCAGACCTGCGCTTTGTGAAAGTGCCCCTGAAGAACAGCGCATCTAACC
ATCTAGGACAGGACTGTGAGGCCTATGAAGATGGGGAACTCACCTACGAGAATGTGCAAGTGTCTCCAGT
CCCAGGAGGGCCACCAGGCTTGGCTTCCCCTGCACTAGCGGACAAAGCAGGTCCTACAGTCTGCTTGCAA
TACTTCTTGCTTGGCCTTCTCGTGTCCTGTCTGATGTTAGGGGTGGCTGTCATCTGCCTGGGAGTTCGCT
ATCTGCAGGTGTCTCGGCAGTTCCAGGAGGGGACCAGGATTTGGGAAGCCACCAATAGCAGCCTGCAGCA
GCAGCTCAGGGAGAAGATAAGTCAGCTGGGGCAGAAGGAGGTGGAGCTTCAGAAGGCTCGGAAAGAGCTG
ATCTCGAGCCAGGACACATTACAGGAGAAGCAGAGGACTCACGAGGACGCTGAGCAGCAACTACAAGCCT
GCCAGGCTGAGAGAGCGAAGACCAAGGAGAACCTGAAAACTGAGGAGGAGCGGAGGAGGGACCTGGACCA
GAGGTTGACAAGCACGCGGGAGACACTGAGGCGCTTCTTCTCTGATTCATCAGACACCTGCTGTCCATGC
GGATGGATTCCATATCAGGAAAGGTGCTTTTACATCTCACATACCCTCGGAAGTCTGGAGGAGAGCCAAA
AATACTGCACATCTCTGTCCTCCAAACTGGCAGCATTCGATGAACCTTCTAAGTATTACTATGAATACCT
CTCTGACGCCCCCCAGGTTTCTCTGCCCAGCGGCTTAGAGGAGTTGCTAGATCGTTCGAAGTCATATTGG
ATACAGATGAGCAAGAAGTGGAGGCAGGACTCTGACTCTCAAAGCCGACATTGTGTCAGGATAAAAACAT
ATTACCAGAAGTGGGAAAGAACAATTTCCAAGTGTGCAGAGCTTCACCCCTGCATTTGTGAGTCGGAGGC
TTTCAGGTTTCCTGATGGGATCAATCTGAACTGA

Translation (337 aa):
MADAITYADLRFVKVPLKNSASNHLGQDCEAYEDGELTYENVQVSPVPGGPPGLASPALADKAGPTVCLQ
YFLLGLLVSCLMLGVAVICLGVRYLQVSRQFQEGTRIWEATNSSLQQQLREKISQLGQKEVELQKARKEL
ISSQDTLQEKQRTHEDAEQQLQACQAERAKTKENLKTEEERRRDLDQRLTSTRETLRRFFSDSSDTCCPC
GWIPYQERCFYISHTLGSLEESQKYCTSLSSKLAAFDEPSKYYYEYLSDAPQVSLPSGLEELLDRSKSYW
IQMSKKWRQDSDSQSRHCVRIKTYYQKWERTISKCAELHPCICESEAFRFPDGINLN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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