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Report for CCDS88137.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88137.1 Public Mus musculus 11 Sanbr 23 108 98 CCDS HistoryNCBI Gene:71675Re-query CCDS DB by CCDS ID:88137.1Re-query CCDS DB by GeneID:71675See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88137.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093267.10 ENSMUSP00000090955.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093267.10Link to Ensembl Protein Viewer:ENSMUSP00000090955.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000093267Re-query CCDS DB by Protein ID:ENSMUSP00000090955
Original member Current member NCBI NM_001347242.1 NP_001334171.1 Accepted alive Link to Nucleotide Sequence:NM_001347242.1Link to Protein Sequence:NP_001334171.1Re-query CCDS DB by Nucleotide ID:NM_001347242Re-query CCDS DB by Protein ID:NP_001334171Link to BLAST:NP_001334171.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001334171.1 572 Q68FF0-2 572 100% 0 0

Chromosomal Locations for CCDS 88137.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 23575481 23575517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23576731 23576822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23581596 23581684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23582867 23582940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23583098 23583126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23584520 23584611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23588635 23588734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23589951 23589983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23593426 23593525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23595381 23595526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23606614 23606766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23609001 23609124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23611747 23611857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23611962 23612048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23615096 23615256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23617138 23617196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23620229 23620460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1719 nt):
ATGGTGATCCATGTATGTGATGAAGCAAAAAGCTTGAAAGAAGATTTTATTTGCCCACGAGATCTTTTGA
TATCAGAAATGAAGTACTTTGCTGAATATTTATCCATGGATGCGCAGCGCTGGGAAGAAGTGGACATTTC
AGTTCATTGCGATGTTCACATTTTCAACTGGCTGATAAAATATGTTAAACGGAACACTAAGGAGAGTAAA
GATTGTGAGATTCCCGCTTTAGAGCCAGGGAATGTCATTTCAATCCTTATTTCATCAGAGTTCTTGAAGA
TGGATTCACTAGTTGAACAATGTATTCAATATTGCCATAAAAATATGAATGCCATAGTAGCTGCTCCATG
CAACATGAACTGTATCAATGCAAACCTTCTTACACGCATAGCTGATCTGTTCACACACAATGAAATTGAT
GACTTAAAAGACAAAAAAGATAAGTTTAGGAGTAAACTGTTTTGTAAGAAGATTGAAAGACTCTTTGATC
CTGAATACTCCAATCCAGATTCTAGAAACAATGCAGCAACACTCTATCGATGCTGTTTGTGTAAGAAACT
TTTAACCAGAGAAACAGAAAGAAGAATTCCTTGCATCCCTGGAAAAATCAATGTGGACCGACATGGAAAT
ATTATCTACATCCACATAAGAGATAAAACCTGGGATGTACATGAATATTTGAATAGTCTTTTTGAAGAAT
TAAAATCTTGGAGAGATGTTTATTGGCGTTTGTGGGGCACAGTCAACTGGCTGACTTGTTCAAGGTGTTA
CCAGGCTTTTCTCTGTATTGAGTTCTCACATTGTCAGTATCACTCAGAAGTGGTAGTTTATTCTAGCACA
GTAAATTCACTAAACACTGTGGGCACTGGAATTTATCCCTGCTGTAACCAGAAGGTTCTTCGATTTGATC
CTACTCAGCTCACAAAGGGCTGTAAGGTGAGGGACCACATGGTGGTTCTTCATGATCAAGGAGAAAATGA
TGATTCGCCTTCTTGCCCACCTGCTAAAATACTGGATGATCTGCACAAGCACAAAGACGTCATTGCTGTG
CCTTTTTTAAAAGATGCAGTTAGTGATCCTGGGGTTGGCTCCTGTGATGAAAAAGGCCTGGAATATGAAA
TTTTACTGGAACCAAATACACCGTGGGGCTCCAAAACTGGGGAGCTCAATGCTTTCTTGTCACTGAAAAA
CTGGACTCTGCAGTTGAAACAACAGTCGCTGTTCTCAGAAGAGGAAGAGTATACCACGGGGTCTGAGGTC
ACTGAAGATGAAGTCGGTGATGAAGAAGAAATTGCCAAGAAACAAAGGAAAAAGGAGAAGCCAAAGAAAT
TTACTAAGCCGCCAAAAAAACAACTGTCCTCACCCTGTTCTCAAAAGAAAGAGAAGACACTGGAGAAGTC
AACTTCTAGAGATGTGTCTCCTTTTGTTGTGAGTATGCAGAAGAATAAATGGGATGCCTCAAGATCCTTG
AGATTCAACCAAGATGCACAAAGAGAAGATGATCAGCGGCGGATGTCTGAAATTACAGGGCATCTAATAA
AAATGAGATTGGGTGATCTGGACCGAGTCAAGGCAAAGGAATCAAAGGAATTTGCAGGAGGTATTTATTC
TAGGCTTGAAGCACAAGTCAGAGCCTCAGTACCTGTCACTGCCCGGCAGAACAGCTCAGACAAAAACCAA
AGGTCTAAAAGTCGTTTTGGTCAAGGGCGTCCTGCATAA

Translation (572 aa):
MVIHVCDEAKSLKEDFICPRDLLISEMKYFAEYLSMDAQRWEEVDISVHCDVHIFNWLIKYVKRNTKESK
DCEIPALEPGNVISILISSEFLKMDSLVEQCIQYCHKNMNAIVAAPCNMNCINANLLTRIADLFTHNEID
DLKDKKDKFRSKLFCKKIERLFDPEYSNPDSRNNAATLYRCCLCKKLLTRETERRIPCIPGKINVDRHGN
IIYIHIRDKTWDVHEYLNSLFEELKSWRDVYWRLWGTVNWLTCSRCYQAFLCIEFSHCQYHSEVVVYSST
VNSLNTVGTGIYPCCNQKVLRFDPTQLTKGCKVRDHMVVLHDQGENDDSPSCPPAKILDDLHKHKDVIAV
PFLKDAVSDPGVGSCDEKGLEYEILLEPNTPWGSKTGELNAFLSLKNWTLQLKQQSLFSEEEEYTTGSEV
TEDEVGDEEEIAKKQRKKEKPKKFTKPPKKQLSSPCSQKKEKTLEKSTSRDVSPFVVSMQKNKWDASRSL
RFNQDAQREDDQRRMSEITGHLIKMRLGDLDRVKAKESKEFAGGIYSRLEAQVRASVPVTARQNSSDKNQ
RSKSRFGQGRPA


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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