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Report for CCDS17486.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17486.2 Public Mus musculus 3 Dap3 23 108 98 CCDS HistoryNCBI Gene:65111Re-query CCDS DB by CCDS ID:17486.2Re-query CCDS DB by GeneID:65111See the combined annotation on chromosome 3 in Sequence Viewer

Public Note for CCDS 17486.2
The coding region has been updated to extend the N-terminus. The use of an alternative upstream start codon, which appears to be rodent-specific, would result in a protein that is 5 aa longer at the N-terminal. The second AUG, 5 aa downstream the rodent start codon, which is better conserved in mammals, could be used at least some of the time.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 17486.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090938.10 ENSMUSP00000088456.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090938.10Link to Ensembl Protein Viewer:ENSMUSP00000088456.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000090938Re-query CCDS DB by Protein ID:ENSMUSP00000088456
Original member Current member NCBI NM_022994.3 NP_075370.2 Accepted alive Link to Nucleotide Sequence:NM_022994.3Link to Protein Sequence:NP_075370.2Re-query CCDS DB by Nucleotide ID:NM_022994Re-query CCDS DB by Protein ID:NP_075370Link to BLAST:NP_075370.2

Chromosomal Locations for CCDS 17486.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 88923828 88923913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88925294 88925411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88926272 88926361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88927011 88927070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88928209 88928367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88928447 88928527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88929396 88929526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88930476 88930568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88930912 88931020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88933565 88933666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88936149 88936253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88942775 88942828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88949868 88949870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1191 nt):
ATGAGAGCAAAGACCATGCTGACAGGAATAACAAGGCTTTTCTCCAGGGTCCAGAAGTTGGACCCGAGGT
GTTTTTTGCACATGAGTGTTCAAGCGACTCAGAACAGTCAGGTTCCAGCTGAGCGTCCCAGAACTGTTTC
CCGCACCAGTGACAGTGACCCGGCTAAGCATGGGGAGCAGCATGAGGGTCAGCACTACAGCATCCCCCTC
CAGGATCTGAAGACAGTGTTTCCTCACGGCCTGCCTCCTCGGTACATGATGCAGGTGAAGACTTTTGGCG
AAGCTTGTCTGATGGTCAGGAAGCCAGCTCTCGAGCTTCTGGGCTACCTGAAAAATACCAATTTTGCTCA
TCCAGCTGTGCGATATCTTCTTTATGGGGAGAAGGGGACAGGAAAGACCCTCAGTCTCTGCCATGCTGTT
CATTTTTGTGCAAGACATGACTGGCTGATTCTGCATATCCCAGATGCTCATCTTTGGGTAAAAAACTGCC
GGGAGCTTCTACAGTCCACTCACAACAAACAGCGCTTTGATCAACCCTTAGAGGCCTCTACCTGGCTGAA
GAATTTCAAAACTACCAATGAGCGCTTCCTGAGTCAGATAAAAGTTCAAGAGAAGTATGTTTGGAATAAG
AGAGAAAGCACTGAGAAAGGCAGTCCTCTGGGAGAAGTTGTTGAACAGGGCCTAACCCGAGTGAGGAATG
CCACTGACGCTGTTGGGGTCGTGCTGAAGGAGCTGAAGGCTCAGAGCGCCCTAGGGCTCTTTCACCTCCT
GGTGGCTGTGGATGGAGTCAATGCCCTCTGGGGAAGGACCACACTGAAAAAAGAAGATAGAACCTTGATT
GCCCCAGAGGAACTCTCCCTTGTCCACAATCTAAGGAAAATGGTGAAAAATGACTGGCATGGAGGTGCAA
TCGTGTTGAGCTTGAGCCAAACCGGGTCTCTCTTTAAGTCCAGAACAGCCTATTTGCCGCATGAGCTGCT
GGGAAAGGAAGGATTTAATGCCCTGGAGCCTTTTCTTCCCATCCTCATTCCCAACTATAATCCAAAGGAG
TTTGAAAGTTCCTTCCAGTACTACTTAGAGAACAACTGGCTTCAACATGAGAAAGCTTCAACAGAAGAAG
GGAGGAAGGAGCTGAGGTTCCTGAGTAACTGCAACCCTGAGCAGCTGGAGCGGCTCTGTGCCTCGCTGTA
A

Translation (396 aa):
MRAKTMLTGITRLFSRVQKLDPRCFLHMSVQATQNSQVPAERPRTVSRTSDSDPAKHGEQHEGQHYSIPL
QDLKTVFPHGLPPRYMMQVKTFGEACLMVRKPALELLGYLKNTNFAHPAVRYLLYGEKGTGKTLSLCHAV
HFCARHDWLILHIPDAHLWVKNCRELLQSTHNKQRFDQPLEASTWLKNFKTTNERFLSQIKVQEKYVWNK
RESTEKGSPLGEVVEQGLTRVRNATDAVGVVLKELKAQSALGLFHLLVAVDGVNALWGRTTLKKEDRTLI
APEELSLVHNLRKMVKNDWHGGAIVLSLSQTGSLFKSRTAYLPHELLGKEGFNALEPFLPILIPNYNPKE
FESSFQYYLENNWLQHEKASTEEGRKELRFLSNCNPEQLERLCASL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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