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Report for CCDS30001.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30001.1 Public Mus musculus X Ssxb5 23 108 98 CCDS HistoryNCBI Gene:387586Re-query CCDS DB by CCDS ID:30001.1Re-query CCDS DB by GeneID:387586See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 30001.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000089370.5 ENSMUSP00000086787.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000089370.5Link to Ensembl Protein Viewer:ENSMUSP00000086787.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000089370Re-query CCDS DB by Protein ID:ENSMUSP00000086787
Original member Current member NCBI NM_199319.3 NP_955023.1 Accepted alive Link to Nucleotide Sequence:NM_199319.3Link to Protein Sequence:NP_955023.1Re-query CCDS DB by Nucleotide ID:NM_199319Re-query CCDS DB by Protein ID:NP_955023Link to BLAST:NP_955023.1

Chromosomal Locations for CCDS 30001.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 8803769 8803804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8804259 8804373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8804670 8804759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8805232 8805281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8805895 8805970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8808826 8808938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (480 nt):
ATGGAAGTGCTTTATGAACCAAAGAATAACTGCAAGGCCTTCCAGGATATTTCTACATACTTCTCTGATG
AAGAGTGGGGAAAGCTGACTCAATGGCAGAAAAGTGCCTACGTGTACATGAAAAGAAACTACATCAGAAT
GACTGACCTAGGGGTCAACGTGAACCAACCAGTTTTCATGCGTGGCAAGGAGCAGGCCAAGCAATTCCTG
GTTGAAGGCATTGAAGATCATGACAGTGAAGATGAATGCTTTGAAGAATCTTTTGGTGTGACACCGAGAA
AACGAATGAAGCTGACATCAGTGACAATAAGTATTCATAATGTAGAAGGAAGCCTTGCCTCTGGAGAGAA
TGATTCCAACTTGGCAGAAACTGATGGCATTCAGGTCAATGTTTGGAGCCACCGGCTGCGAGAGAGGAAG
TATCGAGTGATATATTCAGAGATTAGTGATCCTGAAGAGGAAGAAGATGATGATTACTGA

Translation (159 aa):
MEVLYEPKNNCKAFQDISTYFSDEEWGKLTQWQKSAYVYMKRNYIRMTDLGVNVNQPVFMRGKEQAKQFL
VEGIEDHDSEDECFEESFGVTPRKRMKLTSVTISIHNVEGSLASGENDSNLAETDGIQVNVWSHRLRERK
YRVIYSEISDPEEEEDDDY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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