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Report for CCDS27038.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27038.1 Public Mus musculus 14 Rnase1 23 108 98 CCDS HistoryNCBI Gene:19752Re-query CCDS DB by CCDS ID:27038.1Re-query CCDS DB by GeneID:19752See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27038.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080126.3 ENSMUSP00000079025.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080126.3Link to Ensembl Protein Viewer:ENSMUSP00000079025.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000080126Re-query CCDS DB by Protein ID:ENSMUSP00000079025
Original member Current member NCBI NM_011271.3 NP_035401.2 Accepted alive Link to Nucleotide Sequence:NM_011271.3Link to Protein Sequence:NP_035401.2Re-query CCDS DB by Nucleotide ID:NM_011271Re-query CCDS DB by Protein ID:NP_035401Link to BLAST:NP_035401.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035401.2 149 P00683 149 99.3289% 0 1

Chromosomal Locations for CCDS 27038.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 51145446 51145895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (450 nt):
ATGGGTCTGGAGAAGTCCCTCATTCTGTTTCCATTGTTTGTCCTGCTGCTTGGATGGGTCCAGCCTTCCC
TGGGCAGGGAATCTGCAGCACAGAAGTTTCAGCGGCAGCACATGGATCCAGATGGTTCCTCCATCAACAG
CCCCACCTACTGCAACCAAATGATGAAACGCCGGGATATGACAAATGGGTCATGCAAGCCCGTGAACACC
TTCGTGCATGAGCCCTTGGCAGATGTCCAGGCTGTCTGCTCCCAGGAAAATGTCACCTGCAAGAACAGGA
AGAGCAACTGCTACAAGAGCAGCTCTGCCCTGCACATCACTGACTGCCACCTGAAGGGCAACTCCAAGTA
TCCCAACTGTGACTACAAGACCACTCAATACCAGAAGCACATCATTGTGGCCTGTGAAGGGAACCCCTAC
GTACCAGTCCACTTTGATGCTACTGTGTAG

Translation (149 aa):
MGLEKSLILFPLFVLLLGWVQPSLGRESAAQKFQRQHMDPDGSSINSPTYCNQMMKRRDMTNGSCKPVNT
FVHEPLADVQAVCSQENVTCKNRKSNCYKSSSALHITDCHLKGNSKYPNCDYKTTQYQKHIIVACEGNPY
VPVHFDATV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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