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Report for CCDS17630.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17630.1 Public Mus musculus 3 Sf3b4 23 108 98 CCDS HistoryNCBI Gene:107701Re-query CCDS DB by CCDS ID:17630.1Re-query CCDS DB by GeneID:107701See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17630.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076372.4 ENSMUSP00000075709.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076372.4Link to Ensembl Protein Viewer:ENSMUSP00000075709.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000076372Re-query CCDS DB by Protein ID:ENSMUSP00000075709
Original member Current member NCBI NM_153053.4 NP_694693.1 Accepted alive Link to Nucleotide Sequence:NM_153053.4Link to Protein Sequence:NP_694693.1Re-query CCDS DB by Nucleotide ID:NM_153053Re-query CCDS DB by Protein ID:NP_694693Link to BLAST:NP_694693.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_694693.1 424 Q8QZY9 424 100% 0 0

Chromosomal Locations for CCDS 17630.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 96172574 96172607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96172971 96173099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96173541 96174083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96174323 96174529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96176635 96176808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96176979 96177166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1275 nt):
ATGGCTGCCGGACCGATCTCCGAACGGAATCAGGATGCCACGGTGTACGTGGGCGGTCTGGACGAGAAAG
TGAGTGAGCCGCTGCTGTGGGAGCTCTTTCTCCAGGCAGGGCCAGTGGTCAACACCCACATGCCCAAGGA
CAGAGTCACTGGCCAGCACCAGGGCTATGGCTTTGTTGAATTCCTGAGCGAGGAAGATGCCGACTATGCC
ATTAAGATTATGAACATGATCAAACTCTATGGAAAGCCAATACGGGTGAACAAGGCCTCAGCTCACAACA
AAAACCTGGATGTGGGAGCCAACATTTTCATTGGAAATCTGGACCCAGAAATTGATGAAAAGCTGCTTTA
CGATACTTTCAGCGCCTTTGGAGTCATCCTACAGACCCCCAAGATCATGCGGGACCCTGACACAGGCAAC
TCCAAGGGTTACGCCTTCATTAATTTTGCCTCCTTCGATGCTTCGGATGCAGCAATTGAGGCCATGAACG
GGCAGTACCTGTGTAACCGTCCTATCACTGTGTCTTATGCCTTCAAGAAGGACTCTAAGGGTGAACGCCA
TGGCTCAGCAGCTGAAAGACTCCTGGCAGCCCAGAACCCGCTGTCCCAGGCTGACCGCCCTCACCAGCTG
TTTGCCGATGCACCCCCTCCGCCCTCTGCCCCCAATCCCGTGGTTTCATCCCTGGGTTCTGGGCTTCCTC
CACCAGGCATGCCGCCTCCTGGCTCTTTTCCACCTCCAGTGCCACCTCCTGGGGCCCTCCCTCCTGGGAT
TCCCCCAGCCATGCCCCCACCACCTATGCCACCTGGGGCTGGAGGACATGGCCCCCCAGCAGCAGGGACT
CCAGGGGCTGGACATCCCGGTCACGGACACTCACATCCTCACCCGTTCCCACCAGGTGGGATGCCCCATC
CAGGGATGTCCCAGATGCAGCTGGCCCACCATGGCCCCCATGGCCTAGGACACCCCCATGCTGGGCCTCC
GGGCTCTGGGGGGCAGCCACCACCTCGGCCACCTCCTGGAATGCCTCATCCTGGACCTCCTCCAATGGGC
ATGCCCCCCCGAGGGCCTCCTTTTGGATCTCCCATGGGTCACCCAGGTCCCATGCCTCCACACGGCATGC
GTGGGCCTCCTCCATTGATGCCCCCTCATGGATACACGGGTCCTCCAAGACCCCCTCCCTATGGCTACCA
GCGGGGGCCCCTCCCGCCACCCAGACCCACTCCACGGCCCCCAGTTCCACCTCGTGGTCCTCTTCGGGGC
CCACTTCCTCAGTAA

Translation (424 aa):
MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYA
IKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGN
SKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQL
FADAPPPPSAPNPVVSSLGSGLPPPGMPPPGSFPPPVPPPGALPPGIPPAMPPPPMPPGAGGHGPPAAGT
PGAGHPGHGHSHPHPFPPGGMPHPGMSQMQLAHHGPHGLGHPHAGPPGSGGQPPPRPPPGMPHPGPPPMG
MPPRGPPFGSPMGHPGPMPPHGMRGPPPLMPPHGYTGPPRPPPYGYQRGPLPPPRPTPRPPVPPRGPLRG
PLPQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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