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Report for CCDS28241.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28241.1 Public Mus musculus 16 Or5h17 23 108 98 CCDS HistoryNCBI Gene:258478Re-query CCDS DB by CCDS ID:28241.1Re-query CCDS DB by GeneID:258478See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28241.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073320.4 ENSMUSP00000080602.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073320.4Link to Ensembl Protein Viewer:ENSMUSP00000080602.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000073320Re-query CCDS DB by Protein ID:ENSMUSP00000080602
Original member Current member EBI ENSMUST00000206303.2 ENSMUSP00000145583.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000206303.2Link to Ensembl Protein Viewer:ENSMUSP00000145583.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000206303Re-query CCDS DB by Protein ID:ENSMUSP00000145583
Original member Current member EBI ENSMUST00000214916.1 ENSMUSP00000149279.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214916.1Link to Ensembl Protein Viewer:ENSMUSP00000149279.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214916Re-query CCDS DB by Protein ID:ENSMUSP00000149279
Original member Current member EBI ENSMUST00000214831.1 ENSMUSP00000149404.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214831.1Link to Ensembl Protein Viewer:ENSMUSP00000149404.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214831Re-query CCDS DB by Protein ID:ENSMUSP00000149404
Original member Current member EBI ENSMUST00000213465.1 ENSMUSP00000150952.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213465.1Link to Ensembl Protein Viewer:ENSMUSP00000150952.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213465Re-query CCDS DB by Protein ID:ENSMUSP00000150952
Original member Current member NCBI NM_146485.2 NP_666696.2 Accepted alive Link to Nucleotide Sequence:NM_146485.2Link to Protein Sequence:NP_666696.2Re-query CCDS DB by Nucleotide ID:NM_146485Re-query CCDS DB by Protein ID:NP_666696Link to BLAST:NP_666696.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666696.2 309 Q8VFB9 309 99.6764% 0 1

Chromosomal Locations for CCDS 28241.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 58999687 59000616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (930 nt):
ATGGAAAAGAAGAATGAAACCCTATGGACTGAGTTTGTTCTCACAGGTCTCACATGCCTACCACAGTGGA
AACCTCTCCTATTCCTAGTGTTCTTGGTAATATACTTCATGACCATTGTCGGGAACCTTGGTCTGATCAC
TCTCATCTGGAATGACCCTCACCTTCACATTCCCATGTACTTATTTCTTAGTAACTTAGCCTTTGTGGAT
ACATGGTTATCATCCACAGTGACACCGAGGATGCTATTTAATCTCTTGGACAAGGGCAAGGTGATTTCTG
TGGCTGAATGCAAGACACAATTTTTTTCCTTTGCAATCAGTGTGACCACAGAATGTTTTCTTTTGGCAGC
AATGGCTTACGATCGCTATGCAGCCATATGCAATCCTTTGCTTTATCCAGTGATTATGACCAATAGATTA
TGTGTTCGCCTATTAGCCTTATCATTTATAGGTGGCTTTCTTCATGCTGTGATTCATGAAAGCTTTTTAT
CCAGATTAACCTTCTGTAATTCCAACATAATATATCATTTTTACTGCGATGTGATACCATTGTTAAAAAT
TTCCTGTACTGATCCTTCTTTAAATTATTTGATCATTTTCATTTTCTCTGGTTCAATACAAGTGTTTACC
ATTATGACTGTTCTTATTTCTTACACATTTGTTCTCTTTACAATTTTAAAAAAGAAGTCTGACAAGGGCA
TAAGGAAAGCCTTCTCCACCTGTGGATCCCACCTCTTGTCTGTATCTTTATACTATGGGCCTCTTCTCTT
CATGTATGTGCACCCTGCATCTTCAGAAGTAGACGATCAAGACATGATTCTCTCTCTGTTCTACACAGTT
ATAATCCCCGTATTAAATCCAATTATCTACAGTCTCAGAAATAAGCAAGTCATAGATTCTCTGAAAAAAA
TGTTGAAAATGATGGTTTAG

Translation (309 aa):
MEKKNETLWTEFVLTGLTCLPQWKPLLFLVFLVIYFMTIVGNLGLITLIWNDPHLHIPMYLFLSNLAFVD
TWLSSTVTPRMLFNLLDKGKVISVAECKTQFFSFAISVTTECFLLAAMAYDRYAAICNPLLYPVIMTNRL
CVRLLALSFIGGFLHAVIHESFLSRLTFCNSNIIYHFYCDVIPLLKISCTDPSLNYLIIFIFSGSIQVFT
IMTVLISYTFVLFTILKKKSDKGIRKAFSTCGSHLLSVSLYYGPLLFMYVHPASSEVDDQDMILSLFYTV
IIPVLNPIIYSLRNKQVIDSLKKMLKMMV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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