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Report for CCDS26016.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26016.1 Public Mus musculus 12 Susd6 23 108 98 CCDS HistoryNCBI Gene:217684Re-query CCDS DB by CCDS ID:26016.1Re-query CCDS DB by GeneID:217684See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26016.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068519.6 ENSMUSP00000064961.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068519.6Link to Ensembl Protein Viewer:ENSMUSP00000064961.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000068519Re-query CCDS DB by Protein ID:ENSMUSP00000064961
Original member Current member NCBI NM_178682.4 NP_848797.1 Accepted alive Link to Nucleotide Sequence:NM_178682.4Link to Protein Sequence:NP_848797.1Re-query CCDS DB by Nucleotide ID:NM_178682Re-query CCDS DB by Protein ID:NP_848797Link to BLAST:NP_848797.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848797.1 302 Q8BGE4 302 100% 0 0

Chromosomal Locations for CCDS 26016.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 80828123 80828243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80868427 80868624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80870075 80870210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80874149 80874576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80877096 80877121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (909 nt):
ATGTGCCATGGCAAGATAGCACCAAAGAGCAGCTCAGAGTTTGTTGTGACTTCTGTGGGGCATGGAGTGT
TTCTTCAACTGGTGATCCTTTGCGCTCTGCTGGGAGATGGATTAGCCTCTGTGTGTCCTCTGCCCCCAGA
GCCAGAGAATGGTGGCTACATTTGCCACCCCCGGCCTTGTAAAGACCCCTTGACAGCAGGCAGTGTCATC
GAGTACCTGTGTGCAGAAGGCTACATGTTGAAGGGTGACTACAAATACCTGACCTGCAAAAATGGCGAGT
GGACGCCAGCCATGGAGGTTAGCTGTCATCTCATTGAAGACAAAGAAACCCATGCACTTGGGGTCCCTGC
GCTGTCCATAGTGGCTTCCACTGCCAGCTCTGTGGCACTCATTCTCCTCCTCGTGGTGCTGTTTGTACTG
CTGCAGCCAAAGCTGAAGTCTTTCCATCATAGCAGGCGTGAACAGGGGGTTTCTGGGGATCAAGTCTCCA
TTATGGTGGATGGTGTCCAGGTTGCACTACCTTCATATGAGGAAGCTGTGTATGGAAGTTCTGGTCACTG
CATGCCACCAGCTGATCCCAGAGTACAGATTGTTCTGTCGGAAGGGTCTGCACCTAGTGGGAGGAACATG
CCAAGGGAACAGCAGCTGCAAGGCCAGGAGGCCTGCTCTTCTGCAGGTGGAGAGGACGAGGCCCCGGGCC
ATTCTGGGCTGTGTGAAGCCTGGGGTTCCCAGGGCTCAGAGACTGTGATGGTGCATCAGGCAACCACATC
TTCCTGGGTGGCCGGCTCAGGGAGCAGCCGGCCGACACACAAAGACACTGCAGATTCAGAAAACAGTGAC
ATACAAAGCCTTTTATCCCTCACATCAGAGGAGTACACAGATGATATCCCACTATTGAAAGAAGCATGA

Translation (302 aa):
MCHGKIAPKSSSEFVVTSVGHGVFLQLVILCALLGDGLASVCPLPPEPENGGYICHPRPCKDPLTAGSVI
EYLCAEGYMLKGDYKYLTCKNGEWTPAMEVSCHLIEDKETHALGVPALSIVASTASSVALILLLVVLFVL
LQPKLKSFHHSRREQGVSGDQVSIMVDGVQVALPSYEEAVYGSSGHCMPPADPRVQIVLSEGSAPSGRNM
PREQQLQGQEACSSAGGEDEAPGHSGLCEAWGSQGSETVMVHQATTSSWVAGSGSSRPTHKDTADSENSD
IQSLLSLTSEEYTDDIPLLKEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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