NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS24644.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24644.1 Public Mus musculus 11 Or1ad6 23 108 98 CCDS HistoryNCBI Gene:258912Re-query CCDS DB by CCDS ID:24644.1Re-query CCDS DB by GeneID:258912See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 24644.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052285.1 ENSMUSP00000058119.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052285.1Link to Ensembl Protein Viewer:ENSMUSP00000058119.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000052285Re-query CCDS DB by Protein ID:ENSMUSP00000058119
Original member Current member EBI ENSMUST00000213259.1 ENSMUSP00000149432.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213259.1Link to Ensembl Protein Viewer:ENSMUSP00000149432.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213259Re-query CCDS DB by Protein ID:ENSMUSP00000149432
Original member Current member NCBI NM_146910.1 NP_667121.1 Accepted alive Link to Nucleotide Sequence:NM_146910.1Link to Protein Sequence:NP_667121.1Re-query CCDS DB by Nucleotide ID:NM_146910Re-query CCDS DB by Protein ID:NP_667121Link to BLAST:NP_667121.1

Chromosomal Locations for CCDS 24644.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 50969020 50969967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (948 nt):
ATGGTCAGAGAGAACCAGTCAACAGCCATAGAATTCCTCCTTCTGGGAATTGCTGGGCAGTCAAAGGAGG
AAGAGGTCATCTTCGGAATGTTCTTGTGGATGTACTTGGTCACCGTTTGTGGGAACCTTCTCATCATCCT
GGCCATCAGCTGTGACCCTCATCTCCACACACCCATGTACTTCTTCTTGGCCAACCTCTCCAGTGTTGAC
ATCTGTTTTTCCTCAGTCACTGTCCCCAAGGCTCTGGTGAACTACATGTTGGGAATCAAGACCATCTCTT
ACACAGAGTGTATGACCCAGATCTATTTCTTCATCACATTCATCAACATGGATGGCTTCCTCCTGAGTGT
GATGGCCTATGACCGCTATGTGGCCATCTGTCACCCTCTCCACTACACCATGATGATGAGGCCCAGACTC
TGTGTTCTCCTGGTGGCCATATCATGGGCCATCACAAACCTGCATGCTCTCTTGCATACTCTCCTCATGG
TTCGACTCACCTTCTGTTCCCACAATGCAATGCACCACTTCTTCTGTGACCCCTACCCTATCCTGAAGCT
CTCTTGTTCTGACACCTTCATCAATGACATCACAGCCTTCACTGTGGGTGGGCTGACCTCTATCACACCG
TTCACATGCATCACTGTTTCCTATGGGTATATTCTCTCCAATGTGCTGAAGTTCCCATCTATTCAGGGAA
TAAGGAAAGCCCTGTCTACTTGTGGGTCTCACCTCACTGTGGTCTCTCTCTTCTATGGGGCGATCCTGGG
GGTCTACATGCACCCTTCGTCTACATATTCAGTACAGGACATGGTGGCCACTGCCTTTTTCACAGTGGTG
ACACCCATGGTCAATCCCTTCATCTACAGCCTGAGGAATCGTGATGTCAAAGGAGCCCTCAGGAAACTCA
TGTGTAGGAGACTCACTTCTTCGAGATTCTACAACTAG

Translation (315 aa):
MVRENQSTAIEFLLLGIAGQSKEEEVIFGMFLWMYLVTVCGNLLIILAISCDPHLHTPMYFFLANLSSVD
ICFSSVTVPKALVNYMLGIKTISYTECMTQIYFFITFINMDGFLLSVMAYDRYVAICHPLHYTMMMRPRL
CVLLVAISWAITNLHALLHTLLMVRLTFCSHNAMHHFFCDPYPILKLSCSDTFINDITAFTVGGLTSITP
FTCITVSYGYILSNVLKFPSIQGIRKALSTCGSHLTVVSLFYGAILGVYMHPSSTYSVQDMVATAFFTVV
TPMVNPFIYSLRNRDVKGALRKLMCRRLTSSRFYN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH