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Report for CCDS28223.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28223.1 Public Mus musculus 16 Senp7 23 108 98 CCDS HistoryNCBI Gene:66315Re-query CCDS DB by CCDS ID:28223.1Re-query CCDS DB by GeneID:66315See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28223.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049128.10 ENSMUSP00000043023.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049128.10Link to Ensembl Protein Viewer:ENSMUSP00000043023.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000049128Re-query CCDS DB by Protein ID:ENSMUSP00000043023
Original member Current member NCBI NM_001003972.2 NP_001003972.1 Accepted alive Link to Nucleotide Sequence:NM_001003972.2Link to Protein Sequence:NP_001003972.1Re-query CCDS DB by Nucleotide ID:NM_001003972Re-query CCDS DB by Protein ID:NP_001003972Link to BLAST:NP_001003972.1

Chromosomal Locations for CCDS 28223.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 56075539 56075578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56082356 56082408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56089384 56089464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56097340 56097431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56111606 56111803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56123779 56123970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56126141 56126249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (765 nt):
ATGGACAGGGCCAGGCCTGGGCGTCGGCGAGCTTCATCAGAGATTGTTACAGAGGGAAAACGGAAAAAGT
CATCACCAGCTGATTTACAGAAGATAACAAAGTTGTTAACTGTAAAGTCAGAGGATGTTCTTGCTCAGTC
ACCATTGTCCAAACTCAGAGGCTCAGAATGCTGGTGGACAAGAAGCCTAAGAAATAAAGTCATCTGTCTA
GACCACAAAAAACCAAAAGCTGCCCGTGGGTGTCCTCCTAAGGGATTACCAAAAAGGCATCTCAGAGTTA
TGTTGACGAATGTTCTATGGACGGACTTAGGACGAGAATTCAGAAAGACCCTGCCTAGAAAGGATGCTAA
TTTATGTGCTCCCAGCAAGGTGCAATCAGACTCATTGCCTTCGACATCTGTTGACAGCATAGAGACATGT
CAAAGATTAGATCCTCTTCACCAAAGCCTTAATTTATCCGAAAGGACACCCAGAGTTATACTGACGGATA
TCCGGCAAACAGAATTAGGAAGAAAATATTTAAAGATCCCACCTGTAACTGAGGCCAGTTTGAGTGATAC
AGCCAACCTGAAATCAGAGCAACTTTCTTCATCATCTGATGGCAGCTTAGAGTCTTGTCAGAGTGTAAAT
CATCACAAGAGCTTTTTATCTGAAAGGCTTACCTCTAAAAAAGGGAAAAAGAGCACTACTGCCACAGGCC
AGACGGAGACTGACCAGCCATCTCCTGGACCTGCCTGCACCAATAAAGCTGCCTTTGTCATCTGA

Translation (254 aa):
MDRARPGRRRASSEIVTEGKRKKSSPADLQKITKLLTVKSEDVLAQSPLSKLRGSECWWTRSLRNKVICL
DHKKPKAARGCPPKGLPKRHLRVMLTNVLWTDLGREFRKTLPRKDANLCAPSKVQSDSLPSTSVDSIETC
QRLDPLHQSLNLSERTPRVILTDIRQTELGRKYLKIPPVTEASLSDTANLKSEQLSSSSDGSLESCQSVN
HHKSFLSERLTSKKGKKSTTATGQTETDQPSPGPACTNKAAFVI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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