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Report for CCDS22805.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22805.1 Public Mus musculus 9 Mmp1b 23 108 98 CCDS HistoryNCBI Gene:83996Re-query CCDS DB by CCDS ID:22805.1Re-query CCDS DB by GeneID:83996See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22805.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047888.7 ENSMUSP00000047261.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047888.7Link to Ensembl Protein Viewer:ENSMUSP00000047261.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000047888Re-query CCDS DB by Protein ID:ENSMUSP00000047261
Original member NCBI NM_032007.3 NP_114396.3 Updated not alive Link to Nucleotide Sequence:NM_032007.3Link to Protein Sequence:NP_114396.3Re-query CCDS DB by Nucleotide ID:NM_032007Re-query CCDS DB by Protein ID:NP_114396
Current member NCBI NM_032007.4 NP_114396.3 Accepted alive Link to Nucleotide Sequence:NM_032007.4Link to Protein Sequence:NP_114396.3Re-query CCDS DB by Nucleotide ID:NM_032007Re-query CCDS DB by Protein ID:NP_114396Link to BLAST:NP_114396.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_114396.3 463 Q9EPL6 463 99.3521% 0 3

Chromosomal Locations for CCDS 22805.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 7368241 7368341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7368560 7368663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7369159 7369321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7370730 7370863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7384657 7384771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7384873 7385031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7386304 7386429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7386633 7386781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7386870 7387111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7387894 7387992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1392 nt):
ATGTCTAGCCTTCCTTTGCTGTTGCTTCTCTGGGCTGCCAGCTCATACAGTTTCCCTGTGATTCAGGATG
GACTCCAGAAAAATGTGAAGACAGTCTGGAAATACCTGGAAAACTACTACAACTTGGGCAAAAACATGCA
AGCTAAAAACGTGAATGGCAAGGAGGTGATGGCTGAAAAGCTGAGGCAAATGCAGCAGTTATTTGGGCTG
AAAGTAACTGGAAATTCAGATCCTGAAACCCTGAGAGCTATGAAGAAGCCCAGGTGTGGGGTGCCTGATG
TGGCCCCATATGCCATTACTCACAACAATCCTCGTTGGACCAAAACACATCTGACTTACAGCATTTTAAA
CTACACACCATATTTGTCAAAAGCAGTTGTGGAAGATGCCATCGCGAGAGCCTTTAGAGTCTGGAGTGAT
GTGACACCACTTACGTTCCAAAGAGTCTTTGAGGAGGAAGGCGATATTGTGCTCTCCTTCCACAGAGGAG
ACCATGGTGACCTCTACACATTTGATGGATCTAAATATCACTTTGCTCATGCTTTTCTGCCAGGCCTAGG
TTTGGGGGGCAATGTTCATTATGATCTTGATCAGAAGTGGACCGACAACAATGAGGATTTCAACTTGTTC
TATGTTACGGCTCATGAACTGGGTCACTCCCTTGGACTCTCCCATTCTAATGATGAAGAGGCACTAATGT
TCCCCAGCTACACATGGAGCAATAAAGACTTTGTGCTAAACCAGGATGATATTAATCGCATCCAGGCCTT
ATATGGACCTTCCCCAAATCCCATCCAGTTAACAGATGCAACACTGGATCCATGTAATAGTGGTCTAACC
TTTGATGCTATAATTACATATCGGGGGGAGGTGATATTCTTTAAAGACAGGTTCTACATTCGGGTAATTA
GCTTCCTGCCAGAACCTTTGATCGATGTGATAGACCTTATCTGGCCAAATCTGCCAGGTAAATTTGATGC
AGCTTATGAAGTTAGTGGGGTAGATGAACTCCGCTTTTTCAAAGGCAGCAAAGTATGGGCTGTTCAGGAA
CAGAATGTACTGGAAGGATTTCCCATGGACATCCAGAGTTTCTTTGGCTTCCCTAGCAATGTGACAAACA
TTGATGCTGCTGTTTGTGAAGAAGAGACTGGAAAAACATACTTCTTTGTTGACCACATGTACTGGAGATA
TGATGAAAATACACGGTCCATGGATCCAGGTTACCCCAGATTAATAGCAGAAGACTTTCCTGGAATCGAC
TATAAAGTTGATGATGTTATCCAGAAAGAGGATAATTTCTATTTCTTTCACCAATCAATTCAATACAGAT
TTAACCTCAAAACAAGAAGAATTGATGATTCCAGTGATATTAATACTTGGTTCAACTGCTAA

Translation (463 aa):
MSSLPLLLLLWAASSYSFPVIQDGLQKNVKTVWKYLENYYNLGKNMQAKNVNGKEVMAEKLRQMQQLFGL
KVTGNSDPETLRAMKKPRCGVPDVAPYAITHNNPRWTKTHLTYSILNYTPYLSKAVVEDAIARAFRVWSD
VTPLTFQRVFEEEGDIVLSFHRGDHGDLYTFDGSKYHFAHAFLPGLGLGGNVHYDLDQKWTDNNEDFNLF
YVTAHELGHSLGLSHSNDEEALMFPSYTWSNKDFVLNQDDINRIQALYGPSPNPIQLTDATLDPCNSGLT
FDAIITYRGEVIFFKDRFYIRVISFLPEPLIDVIDLIWPNLPGKFDAAYEVSGVDELRFFKGSKVWAVQE
QNVLEGFPMDIQSFFGFPSNVTNIDAAVCEEETGKTYFFVDHMYWRYDENTRSMDPGYPRLIAEDFPGID
YKVDDVIQKEDNFYFFHQSIQYRFNLKTRRIDDSSDINTWFNC


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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