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Report for CCDS29714.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29714.1 Public Mus musculus 19 Pgm5 23 108 98 CCDS HistoryNCBI Gene:226041Re-query CCDS DB by CCDS ID:29714.1Re-query CCDS DB by GeneID:226041See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29714.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047666.4 ENSMUSP00000036025.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047666.4Link to Ensembl Protein Viewer:ENSMUSP00000036025.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000047666Re-query CCDS DB by Protein ID:ENSMUSP00000036025
Original member Current member NCBI NM_175013.2 NP_778178.3 Accepted alive Link to Nucleotide Sequence:NM_175013.2Link to Protein Sequence:NP_778178.3Re-query CCDS DB by Nucleotide ID:NM_175013Re-query CCDS DB by Protein ID:NP_778178Link to BLAST:NP_778178.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_778178.3 567 Q8BZF8 567 100% 0 0

Chromosomal Locations for CCDS 29714.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 24684485 24684574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24709228 24709362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24727669 24727852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24733542 24733677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24750365 24750480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24815658 24815812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24816411 24816601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24820120 24820245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24824292 24824438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24834743 24834905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24861529 24861789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1704 nt):
ATGGAGGGGAGCCCCATCCCAGTGCTGACGGTGCCCACGGCGCCCTATGAGGACCAGCGGCCGACCGGTG
GCGGCGGGCTGCGACGGCCCACAGGGCTCTTCGAGGGCCAGCGCAACTACCTGCCCAACTTCATCCAGAG
TGTGCTGTCGTCCATCGACCTGCGCGACCGTCAGGGTTGCACCATGGTGGTGGGCAGCGACGGCAGGTAC
TTCAGCAGGACGGCTACTGAGATCGTGGTGCAGATGGCTGCGGCCAATGGGATTGGTCGACTGATTATTG
GGCAGAATGGCATCTTGTCGACCCCTGCAGTCTCCTGCATTATCAGGAAGATCAAGGCAGCTGGTGGGAT
CATTCTAACAGCCAGCCACTGTCCTGGAGGACCAGGGGGAGAGTTTGGAGTGAAGTTTAATGTTGCCAAT
GGAGGTCCTGCACCAGATGTTGTCTCAGACAAAATCTACCAGATCAGCAAAACAATTGAGGAATATGCCA
TATGTCCAGATCTTCGAATTGACCTATCTCGACTGGGAAGACAAGAATTTGACCTGGAGAACAAGTTCAA
ACCATTCAGAGTGGAGATTGTGGACCCCGTTGACATCTATCTCAACCTCCTCCGGAATATCTTTGACTTT
AACGCCATCAAGAGTTTGCTGACAGGACCCAGCCAACTGAAGATCCGTGTTGATGCTATGCATGGAGTTA
TGGGACCCTATGTAAGAAAAGTTCTGTGTGATGAACTGGGAGCTCCAGCCAACTCCGCAATAAACTGTGT
CCCACTAGAAGACTTCGGAGGGCAGCACCCAGACCCAAACCTGACCTATGCAACCACCCTCCTGGAAGCC
ATGAAGGGGGGAGAATATGGATTTGGAGCTGCGTTTGATGCTGATGGGGACCGTTATATGATCCTTGGCC
AAAATGGCTTCTTTGTGAGTCCCTCAGACTCTCTCGCCATCATCGCTGCCAACCTCTCTTGCATTCCGTA
TTTCCGTCAGATGGGGGTTCGCGGGTTTGGGAGGAGTATGCCAACCAGCACGGCTCTGGACAGAGTGGCT
AAATCAATGAAGGTCCCCGTGTATGAGACCCCTGCTGGATGGAGATTCTTCTCAAATCTGATGGACTCCG
GACGATGCTCTCTGTGTGGAGAGGAGAGCTTCGGCACTGGGTCTGATCACCTCCGAGAGAAAGATGGCCT
CTGGGCTGTCTTGGTCTGGCTGTCCATTATTGCTGCCCGGAAGCAGAGCGTGGAGGAAATTGTTAGAGAC
CATTGGGCCAAATATGGCCGCCACTACTACTGCAGGTTTGATTACGAGGGACTGGAGCCCAAGGCAACCT
ATTACATCATGAGGGATCTGGAGGCCCTAGTGACAGACAAGTCCTTCATCGGCCAGCAGTTTGCTGTAGG
GAGCCACATTTACAGCATTGCAAAGACTGACAGCTTTGAATATGTGGACCCCGTGGATGGCACCGTGACC
AAGAAACAGGGCCTGAGGATCATCTTCTCGGATGCATCACGGCTAATATTCCGGCTCAGTTCCTCCAGTG
GTGTGCGGGCCACCATCAGACTGTATGCAGAGAGCTACGAGAGGGATCCCAGTGGTCACGACCAGGAACC
ACAGGCAGTGCTGAGCCCGCTCATCGCCATCGCATTGAAAATATCTCAGATTCACGAGAGGACCGGCCGG
AGAGGACCCACCGTCATCACCTGA

Translation (567 aa):
MEGSPIPVLTVPTAPYEDQRPTGGGGLRRPTGLFEGQRNYLPNFIQSVLSSIDLRDRQGCTMVVGSDGRY
FSRTATEIVVQMAAANGIGRLIIGQNGILSTPAVSCIIRKIKAAGGIILTASHCPGGPGGEFGVKFNVAN
GGPAPDVVSDKIYQISKTIEEYAICPDLRIDLSRLGRQEFDLENKFKPFRVEIVDPVDIYLNLLRNIFDF
NAIKSLLTGPSQLKIRVDAMHGVMGPYVRKVLCDELGAPANSAINCVPLEDFGGQHPDPNLTYATTLLEA
MKGGEYGFGAAFDADGDRYMILGQNGFFVSPSDSLAIIAANLSCIPYFRQMGVRGFGRSMPTSTALDRVA
KSMKVPVYETPAGWRFFSNLMDSGRCSLCGEESFGTGSDHLREKDGLWAVLVWLSIIAARKQSVEEIVRD
HWAKYGRHYYCRFDYEGLEPKATYYIMRDLEALVTDKSFIGQQFAVGSHIYSIAKTDSFEYVDPVDGTVT
KKQGLRIIFSDASRLIFRLSSSSGVRATIRLYAESYERDPSGHDQEPQAVLSPLIAIALKISQIHERTGR
RGPTVIT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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