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Report for CCDS26446.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26446.1 Public Mus musculus 13 Slc22a23 23 108 98 CCDS HistoryNCBI Gene:73102Re-query CCDS DB by CCDS ID:26446.1Re-query CCDS DB by GeneID:73102See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26446.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040336.11 ENSMUSP00000042742.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040336.11Link to Ensembl Protein Viewer:ENSMUSP00000042742.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000040336Re-query CCDS DB by Protein ID:ENSMUSP00000042742
Original member Current member NCBI NM_001033167.3 NP_001028339.1 Accepted alive Link to Nucleotide Sequence:NM_001033167.3Link to Protein Sequence:NP_001028339.1Re-query CCDS DB by Nucleotide ID:NM_001033167Re-query CCDS DB by Protein ID:NP_001028339Link to BLAST:NP_001028339.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028339.1 689 Q3UHH2-1 689 100% 0 0

Chromosomal Locations for CCDS 26446.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 34182954 34183311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 34192156 34192279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 34193249 34193272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 34193394 34193426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 34195252 34195484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 34197802 34197904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 34203917 34204044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 34221903 34222071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 34298997 34299151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 34305158 34305261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 34344159 34344797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2070 nt):
ATGGCGATAGACCGGCGGCGTGAGGCGGCGGGTAGTGGTGCCGGGCGGCAGCCGGCCCCGGCGGAGGAGA
ACGGCTCCCTGCCGCCCGGGGACGCGGCGGCCTCGGCGCCCCTCGGAGGGCGCGCGGGCTCCGGCAGCAG
CGCGGAGATCCAGCCACTGCCTGCGCTGCACCCCAGCGGCGGCCCGCACTCGAGCTGCTGCGCGGCGACA
GCCGCCCCGAGCCTCCTGTTGCTGGACTACGATGGCTCCGTGCTGCCCTTCCTCGGGGGCCTGGGCGGCG
GCTACCAGAAGACCCTGGTGGTGCTCACCTGGATCCCGGCACTGTTCATTGGCTTCAGCCAGTTCTCGGA
CTCCTTCCTTCTGGACCAGCCCGATTTCTGGTGCCGCGGGGCCGGCAAAGGCACCGAGCTGGCGGGTGCC
ACTGTCACCGGCCGATGGGGTGACATGGGCAATTGGACCAGCCCCTCGGCCACCCCCTTCTCCACTGCCT
CCTGGGGGACCACGAGCAACCGAAGCAACAGCAGCGACACACCACCCCTCCCATCCCCTCCAGGCAAGGG
GAACAACGACTCAAATTGCGACTGCCACGCGTGGGACTACGGCATCCGCACTGGTCTCATCCAAAACGTG
GTCAGCAAGTGGGATCTTGTGTGTGATAATACCTGGAAAGTCCATATCGCTAAGTTCTCCTTACTGGTTG
GATTAATCTTTGGCTACCTAATAACTGGATGCATTGCTGACTGGGTTGGCCGGCGGCCTGTGCTGCTGTT
TTCCACCATCTTCATCCTCATCTTTGGACTGACTGTGGCACTGTCAGTGAATGTGACAATGTTCAGCACA
CTCAGGTTCTTTGAAGGATTTTGCCTGGCTGGAATCATCCTCACCTTGTATGCATTACGAATAGAGCTAT
GCCCTCCAGGAAAACGGTTCATAATTACCATGGTGGCGAGCTTCGTGGCCATGGCGGGCCAGTTCCTCAT
GCCGGGGCTGGCTGCGCTGTGCCGGGACTGGCAGGTGTTGCAGGCCCTCATCATCTGTCCCTTCCTGCTC
ATGCTGCTCTACTGGTCGATTTTCCCTGAGTCTCTCCGATGGCTAATGGCTACCCAGCAATTTGAATCAG
CAAAGAAGTTGATCCTGTACCTTACTCAGAAGAACTGTGTGAGCCCTGAGAGTGATATCAAGGGAGTGAT
GCCAGAGCTCGAGAAAGAGCTTTCACGGAGGCCCAAGAAGGTGTGCATCGTGAAGGTGGTGGGGACGAGG
AACCTGTGGAAAAACATTGTGGTTCTCTGTGTGAACTCGCTGACAGGGTACGGGATCCACCACTGCTTTG
CAAGAAGCATGATGGGCCATGAAGTGAAGGTGCCGCTCCTGGAGAACTTCTACGCTGACTACTACACCAT
GGCCAGCATCGCACTGGCCTCCTGCCTAGCCATGTGTCTGGTAGTCAAGTTCCTCGGGCGCAGGGGAGGG
CTGCTGCTCTTCATGATCCTCACTGCCCTGGCCTCACTTCTACAGCTCGGGCTTCTCAACTTGATCGGCA
AATACAGCCAGCATCCAGACTCAGAATTGCAGCTGAAGTTGGCCGTAGGGATGAGTGACAGCGTCAAGGA
CAAGTTCTCCATTGCGTTTTCCATCGTGGGAATGTTTGCATCCCATGCGGTGGGGAGCCTCAGTGTCTTC
TTCTGTGCAGAGATCACTCCCACAGTGATAAGGTGTGGTGGGCTCGGGCTGGTGCTGGCCAGTGCAGGTT
TTGGCATGCTGACAGCGCCCATTATTGAGCTGCACAACCAAAAAGGCTACTTCCTGCACCATATCATCTT
CGCCTGCTGCACGCTCATCTGCATCATTTGCATCCTCCTGCTTCCTGAGAGCAGGAACCAGAACCTGCCT
GAGAATATCGCCAACGGGGAACACTACACACGGCAACCGCTGCTGCCACACAAGAAGGGAGAGCAGCCCT
TGCTGCTCACCAACGCGGAGCTCAAGGACTACTCGGGCCTGCATGACGTGGCTGCAGTGGGTGACGGGCT
GCCAGAGGGGGCCACTGCCAATGGCATGAAGACTATGTAG

Translation (689 aa):
MAIDRRREAAGSGAGRQPAPAEENGSLPPGDAAASAPLGGRAGSGSSAEIQPLPALHPSGGPHSSCCAAT
AAPSLLLLDYDGSVLPFLGGLGGGYQKTLVVLTWIPALFIGFSQFSDSFLLDQPDFWCRGAGKGTELAGA
TVTGRWGDMGNWTSPSATPFSTASWGTTSNRSNSSDTPPLPSPPGKGNNDSNCDCHAWDYGIRTGLIQNV
VSKWDLVCDNTWKVHIAKFSLLVGLIFGYLITGCIADWVGRRPVLLFSTIFILIFGLTVALSVNVTMFST
LRFFEGFCLAGIILTLYALRIELCPPGKRFIITMVASFVAMAGQFLMPGLAALCRDWQVLQALIICPFLL
MLLYWSIFPESLRWLMATQQFESAKKLILYLTQKNCVSPESDIKGVMPELEKELSRRPKKVCIVKVVGTR
NLWKNIVVLCVNSLTGYGIHHCFARSMMGHEVKVPLLENFYADYYTMASIALASCLAMCLVVKFLGRRGG
LLLFMILTALASLLQLGLLNLIGKYSQHPDSELQLKLAVGMSDSVKDKFSIAFSIVGMFASHAVGSLSVF
FCAEITPTVIRCGGLGLVLASAGFGMLTAPIIELHNQKGYFLHHIIFACCTLICIICILLLPESRNQNLP
ENIANGEHYTRQPLLPHKKGEQPLLLTNAELKDYSGLHDVAAVGDGLPEGATANGMKTM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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