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Report for CCDS29270.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29270.1 Public Mus musculus 18 Iigp1 23 108 98 CCDS HistoryNCBI Gene:60440Re-query CCDS DB by CCDS ID:29270.1Re-query CCDS DB by GeneID:60440See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29270.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032473.6 ENSMUSP00000032473.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032473.6Link to Ensembl Protein Viewer:ENSMUSP00000032473.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000032473Re-query CCDS DB by Protein ID:ENSMUSP00000032473
Original member Current member EBI ENSMUST00000066912.12 ENSMUSP00000063390.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000066912.12Link to Ensembl Protein Viewer:ENSMUSP00000063390.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000066912Re-query CCDS DB by Protein ID:ENSMUSP00000063390
Original member Current member EBI ENSMUST00000237185.1 ENSMUSP00000157568.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000237185.1Link to Ensembl Protein Viewer:ENSMUSP00000157568.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000237185Re-query CCDS DB by Protein ID:ENSMUSP00000157568
Original member Current member NCBI NM_001146275.1 NP_001139747.1 Accepted alive Link to Nucleotide Sequence:NM_001146275.1Link to Protein Sequence:NP_001139747.1Re-query CCDS DB by Nucleotide ID:NM_001146275Re-query CCDS DB by Protein ID:NP_001139747Link to BLAST:NP_001139747.1
Original member Current member NCBI NM_021792.5 NP_068564.4 Accepted alive Link to Nucleotide Sequence:NM_021792.5Link to Protein Sequence:NP_068564.4Re-query CCDS DB by Nucleotide ID:NM_021792Re-query CCDS DB by Protein ID:NP_068564Link to BLAST:NP_068564.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139747.1 413 Q9QZ85 413 100% 0 0
NP_068564.4 413 Q9QZ85 413 100% 0 0

Chromosomal Locations for CCDS 29270.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 60389812 60391053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1242 nt):
ATGGGTCAGCTGTTCTCTTCACCTAAGAGTGATGAGAATAATGATTTGCCCTCCAGCTTTACTGGTTATT
TTAAGAAATTTAATACGGGAAGAAAAATCATTTCTCAAGAGATCCTCAATTTGATTGAATTAAGGATGAG
AAAAGGGAATATTCAGTTGACAAACTCTGCAATCAGTGATGCATTAAAAGAAATCGATAGTAGTGTGCTC
AATGTTGCTGTCACCGGGGAGACGGGATCAGGGAAGTCCAGCTTCATCAATACCCTGAGAGGCATTGGGA
ATGAAGAAGAAGGTGCAGCTAAAACTGGGGTGGTGGAGGTAACCATGGAAAGACATCCATACAAACACCC
CAATATACCCAATGTGGTTTTTTGGGACCTGCCTGGGATTGGAAGCACAAATTTCCCACCAAACACTTAC
CTGGAGAAAATGAAGTTCTATGAGTACGATTTCTTCATTATTATTTCGGCCACACGCTTCAAGAAAAATG
ATATAGACATTGCCAAAGCAATCAGCATGATGAAGAAGGAATTCTACTTCGTGAGAACCAAGGTGGACTC
TGACATAACAAATGAAGCAGATGGCAAACCTCAAACCTTTGACAAAGAAAAGGTCCTGCAGGACATCCGC
CTTAACTGTGTGAACACCTTTAGGGAGAATGGCATTGCTGAGCCACCAATCTTCCTGCTCTCTAACAAAA
ATGTTTGTCACTATGACTTCCCCGTCCTGATGGACAAGCTGATAAGTGACCTCCCTATCTACAAGAGACA
CAATTTTATGGTCTCCTTACCCAATATCACAGATTCAGTCATTGAAAAGAAGCGGCAATTTCTGAAGCAG
AGGATTTGGCTGGAAGGATTTGCTGCTGACCTAGTGAATATCATCCCTTCTCTGACCTTTCTCTTGGACA
GTGATTTGGAGACTCTGAAGAAAAGCATGAAATTCTACCGCACTGTGTTTGGAGTGGATGAAACATCTTT
GCAGAGATTAGCTAGGGACTGGGAAATAGAGGTGGATCAGGTGGAGGCCATGATAAAATCTCCTGCTGTG
TTCAAACCTACAGATGAAGAAACAATACAAGAAAGGCTTTCAAGATATATTCAGGAGTTCTGTTTGGCTA
ATGGGTACTTACTTCCTAAAAATAGTTTTCTTAAAGAAATATTTTACCTGAAATATTATTTCCTTGACAT
GGTGACTGAGGATGCTAAAACTCTTCTTAAAGAGATATGTTTAAGAAACTAG

Translation (413 aa):
MGQLFSSPKSDENNDLPSSFTGYFKKFNTGRKIISQEILNLIELRMRKGNIQLTNSAISDALKEIDSSVL
NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPNTY
LEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGKPQTFDKEKVLQDIR
LNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKRHNFMVSLPNITDSVIEKKRQFLKQ
RIWLEGFAADLVNIIPSLTFLLDSDLETLKKSMKFYRTVFGVDETSLQRLARDWEIEVDQVEAMIKSPAV
FKPTDEETIQERLSRYIQEFCLANGYLLPKNSFLKEIFYLKYYFLDMVTEDAKTLLKEICLRN


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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