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Report for CCDS19855.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19855.1 Public Mus musculus 5 Arpc1a 23 108 98 CCDS HistoryNCBI Gene:56443Re-query CCDS DB by CCDS ID:19855.1Re-query CCDS DB by GeneID:56443See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 19855.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031625.14 ENSMUSP00000031625.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031625.14Link to Ensembl Protein Viewer:ENSMUSP00000031625.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000031625Re-query CCDS DB by Protein ID:ENSMUSP00000031625
Original member Current member NCBI NM_019767.2 NP_062741.1 Accepted alive Link to Nucleotide Sequence:NM_019767.2Link to Protein Sequence:NP_062741.1Re-query CCDS DB by Nucleotide ID:NM_019767Re-query CCDS DB by Protein ID:NP_062741Link to BLAST:NP_062741.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062741.1 370 Q9R0Q6 370 100% 0 0

Chromosomal Locations for CCDS 19855.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 145091183 145091246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145092458 145092562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145096052 145096274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145097216 145097323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145101057 145101269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145104442 145104517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145104698 145104891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145107045 145107135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145108377 145108415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1113 nt):
ATGTCTCTGCATCAGTTTCTGCTGGAGCCAATCACCTGCCATGCCTGGAACAGGGATCGTACCCAGATCG
CCCTGAGCCCCAATAACCATGAGGTGCACATCTATAAGAAGAATGGGAGTCAGTGGACGAAAGCGCACGA
GCTGAAGGAACATAATGGGCATATCACAGGTATTGACTGGGCTCCTAAGAGCGACCGTATTGTCACTTGT
GGGGCAGACCGCAACGCCTATGTCTGGAGTCAGAAAGATGGCATCTGGAAGCCCACCCTGGTGATCCTGA
GGATTAACCGTGCAGCCACTTTTGTGAAGTGGTCCCCACTTGAGAACAAGTTTGCTGTGGGGAGCGGAGC
CCGGCTCATCTCTGTCTGTTACTTTGAGTCTGAGAATGACTGGTGGGTGAGCAAGCACATTAAGAAGCCG
ATCCGCTCCACAGTCCTCAGCTTGGACTGGCATCCCAACAATGTTTTGCTGGCTGCAGGCTCCTGTGACT
TCAAATGCAGAGTGTTCTCTGCCTATATCAAAGAGGTGGATGAGAAGCCAGCCAGCACGCCCTGGGGCAG
CAAGATGCCTTTTGGTCAGCTGATGTCTGAGTTTGGTGGCAGTGGCACCGGCGGCTGGGTGCATGGGGTC
AGTTTCTCTGCCAGTGGGAACCGCCTGGCCTGGGTCAGCCACGACAGCACAGTGTCTGTTGCTGATGCCT
CAAAAAGTGTGCAGGTTTCAACTCTGAGAACAGAGTTCCTGCCGCTGCTCAGTGTGTCATTTGTCTCAGA
GAACAGCGTGGTGGCTGCCGGCCATGACTGCTGCCCGATGCTCTTTAACTACGATGACCGTGGCTGTTTG
ACCTTTGTGTCCAAACTGGATGTCCCAAAACAGAGCATCCAGCGCAACATGTCTGCTATGGAACGTTTCC
GTAACATGGACAAGAGGGCCACTACTGAGGACCGCAACACAGCCTTGGAAACACTGCACCAGAACAGCAT
CACTCAAGTGTCTATTTATGAAGTGGACAAGCAAGATTGTCGCAAATTTTGCACTACTGGCATTGATGGA
GCCATGACAATTTGGGATTTCAAGACCCTAGAGTCTTCCATCCAGGGTCTCCGGATAATGTGA

Translation (370 aa):
MSLHQFLLEPITCHAWNRDRTQIALSPNNHEVHIYKKNGSQWTKAHELKEHNGHITGIDWAPKSDRIVTC
GADRNAYVWSQKDGIWKPTLVILRINRAATFVKWSPLENKFAVGSGARLISVCYFESENDWWVSKHIKKP
IRSTVLSLDWHPNNVLLAAGSCDFKCRVFSAYIKEVDEKPASTPWGSKMPFGQLMSEFGGSGTGGWVHGV
SFSASGNRLAWVSHDSTVSVADASKSVQVSTLRTEFLPLLSVSFVSENSVVAAGHDCCPMLFNYDDRGCL
TFVSKLDVPKQSIQRNMSAMERFRNMDKRATTEDRNTALETLHQNSITQVSIYEVDKQDCRKFCTTGIDG
AMTIWDFKTLESSIQGLRIM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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