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Report for CCDS17393.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17393.1 Public Mus musculus 3 Shox2 23 108 98 CCDS HistoryNCBI Gene:20429Re-query CCDS DB by CCDS ID:17393.1Re-query CCDS DB by GeneID:20429See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17393.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029422.13 ENSMUSP00000029422.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029422.13Link to Ensembl Protein Viewer:ENSMUSP00000029422.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000029422Re-query CCDS DB by Protein ID:ENSMUSP00000029422
Original member Current member NCBI NM_013665.1 NP_038693.1 Accepted alive Link to Nucleotide Sequence:NM_013665.1Link to Protein Sequence:NP_038693.1Re-query CCDS DB by Nucleotide ID:NM_013665Re-query CCDS DB by Protein ID:NP_038693Link to BLAST:NP_038693.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038693.1 331 P70390-1 331 100% 0 0

Chromosomal Locations for CCDS 17393.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 66973650 66973943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 66975444 66975532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 66975853 66975910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 66978186 66978394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 66981211 66981556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (996 nt):
ATGGAAGAACTTACGGCGTTCGTCTCCAAGTCTTTTGACCAGAAAGTGAAGGAGAAGAAGGAGGCCATCA
CGTACCGGGAGGTGCTAGAGAGCGGGCCGCTGCGCGGGGCCAAAGAGCCCGGTTGCGTCGAGCCGGGCCG
CGACGACCGCAGCAGCCCGGCAGTCCGGGCGGCCGGCGGAGGCGGCGGCGCGGGAGGAGGCGGAGGCGGA
GGCGGAGGAGGCGGAGGAGGTGCTGGAGGAGGAGGAGCAGGCGGAGGAGCTGGAGGAGGGCGCTCTCCCG
TCCGGGAGCTGGACATGGGAGCCGCGGAGCGGAGCAGGGAGCCCGGCAGCCCGCGGCTGACGGAGGTGTC
CCCTGAACTGAAGGATCGCAAAGACGATGCGAAAGGGATGGAGGACGAAGGCCAGACCAAAATCAAGCAG
AGGCGAAGTCGGACCAATTTTACCCTGGAACAACTCAACGAGCTGGAGAGGCTTTTCGATGAGACCCACT
ATCCAGACGCTTTCATGCGCGAGGAATTGAGCCAGCGACTGGGGCTCTCTGAGGCCCGAGTACAGGTTTG
GTTTCAAAATCGAAGAGCTAAGTGTAGAAAACAGGAAAATCAACTTCACAAAGGTGTCCTTATAGGAGCC
GCTAGCCAGTTTGAAGCTTGTAGAGTTGCACCCTATGTCAACGTAGGTGCTTTAAGGATGCCATTTCAGC
AGGATAGTCATTGCAACGTGACGCCCTTGTCCTTTCAGGTTCAGGCGCAGCTGCAGCTGGACAGCGCCGT
GGCGCACGCGCACCACCACCTGCATCCGCACCTGGCCGCGCACGCGCCTTACATGATGTTCCCGGCACCG
CCCTTCGGACTGCCGCTGGCCACGCTGGCCGCGGACTCGGCCTCGGCCGCCTCGGTGGTGGCCGCTGCCG
CCGCCGCCAAGACCACCAGCAAGAACTCCAGCATCGCGGATCTCAGACTGAAAGCTAAAAAGCACGCGGC
CGCCCTGGGTCTGTGA

Translation (331 aa):
MEELTAFVSKSFDQKVKEKKEAITYREVLESGPLRGAKEPGCVEPGRDDRSSPAVRAAGGGGGAGGGGGG
GGGGGGGAGGGGAGGGAGGGRSPVRELDMGAAERSREPGSPRLTEVSPELKDRKDDAKGMEDEGQTKIKQ
RRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQLHKGVLIGA
ASQFEACRVAPYVNVGALRMPFQQDSHCNVTPLSFQVQAQLQLDSAVAHAHHHLHPHLAAHAPYMMFPAP
PFGLPLATLAADSASAASVVAAAAAAKTTSKNSSIADLRLKAKKHAAALGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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