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Report for CCDS29364.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29364.1 Public Mus musculus 18 Rbfa 23 108 98 CCDS HistoryNCBI Gene:68731Re-query CCDS DB by CCDS ID:29364.1Re-query CCDS DB by GeneID:68731See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29364.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025462.6 ENSMUSP00000025462.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025462.6Link to Ensembl Protein Viewer:ENSMUSP00000025462.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000025462Re-query CCDS DB by Protein ID:ENSMUSP00000025462
Original member NCBI NM_199197.1 NP_954667.1 Updated not alive Link to Nucleotide Sequence:NM_199197.1Link to Protein Sequence:NP_954667.1Re-query CCDS DB by Nucleotide ID:NM_199197Re-query CCDS DB by Protein ID:NP_954667
Current member NCBI NM_199197.2 NP_954667.1 Accepted alive Link to Nucleotide Sequence:NM_199197.2Link to Protein Sequence:NP_954667.1Re-query CCDS DB by Nucleotide ID:NM_199197Re-query CCDS DB by Protein ID:NP_954667Link to BLAST:NP_954667.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_954667.1 350 Q6P3B9 350 100% 0 0

Chromosomal Locations for CCDS 29364.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 80192480 80192882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 80193232 80193299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 80195019 80195103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 80197250 80197362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 80197664 80197883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 80200386 80200549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1053 nt):
ATGTGGGCCGGCGTCGCGGGGCTGAGAGGCTCCTGCGCCGGGCTGCAGGCTCTGTGGGGCGGCCACAGGG
CTGCGCTTCTTCTCGGCCGCTCGCCGGCCCTGCACACCTCGGTCGCCTCCTGCGGCAGCAAGAACTTGCT
CAAGAAATTTGCTTCGAAAACCAGGAAGAAGTTTTGGTATGAAGGTCCCTCCCTGGGGTCTCACTTGACC
CCCAGGCCATCCAAGCATGAGTTCCTCACGAAGACCACCTCAAAGAAGACTAGGAAGGAAGACAGCATCC
GCCTGAGGGTCCTGAACGGCCTTCTCTACAAATCATTGACGGAACTGCTGTGCACTCCTCAAGTGAGCCA
GGAGGTCTACGACCTGAATGTGGAGCTGTCCAAGGTCTCTGTGACTTCAGACTTCTCAGCCTGCCGAGTG
TACTGGAAGACGGGGGTCTCTGCGGAGCAGAACAAGCACACGGAGTCGGTGCTGCAGAGGAGCGCTGCCT
ACATGAGGCATCTTCTGATATCTCAGCAAACCCTGAGAAATGTTCCACCCATAGTGTTTGTTCAAGACAA
AAGAGACTTGGTCCTGGCTGAGGTAGATCGGTTGCTGGCAGAGGCTGACTTTGGACCCCCAGATGAAAGG
GACGACTTGGACGGTTTGAGGAACGCCGATGCCCAGGTACCACATGACTCCCCAGAACCAGCCGCACACC
CAAATCTGTGTGGGATTGACCACGAGGCGCTGAATAAGCAAATAATGGAGTACAAACGCAAGAAGGAGCG
AGGGCTTCAGTGTCAGAGTCTGGCGCCACCATCAGGGCGGGAGCAGGCACCTGAACCGACCCGTCTGCTC
CGGAAGAGAGAGAAGGTGCGATCCCGGTGGCAGCACCGGGACGCTTCCCCCAGAAGCTTCCTTTTGGGCG
AGGAGGACGAGGACGAGGACAGCAGCACAGAGTGGGAATGCCACGCCCACGAGGCAGAGGATGATGATGA
TCATCAGGAAGAGGAGCTCGGAGCTGACAGAGGCGCACAGCGGGGCCTCTGTGGCAAGAGAGAGCAGGGG
TAG

Translation (350 aa):
MWAGVAGLRGSCAGLQALWGGHRAALLLGRSPALHTSVASCGSKNLLKKFASKTRKKFWYEGPSLGSHLT
PRPSKHEFLTKTTSKKTRKEDSIRLRVLNGLLYKSLTELLCTPQVSQEVYDLNVELSKVSVTSDFSACRV
YWKTGVSAEQNKHTESVLQRSAAYMRHLLISQQTLRNVPPIVFVQDKRDLVLAEVDRLLAEADFGPPDER
DDLDGLRNADAQVPHDSPEPAAHPNLCGIDHEALNKQIMEYKRKKERGLQCQSLAPPSGREQAPEPTRLL
RKREKVRSRWQHRDASPRSFLLGEEDEDEDSSTEWECHAHEAEDDDDHQEEELGADRGAQRGLCGKREQG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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