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Report for CCDS22085.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22085.1 Public Mus musculus 8 Ccl25 23 108 98 CCDS HistoryNCBI Gene:20300Re-query CCDS DB by CCDS ID:22085.1Re-query CCDS DB by GeneID:20300See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22085.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024004.8 ENSMUSP00000024004.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024004.8Link to Ensembl Protein Viewer:ENSMUSP00000024004.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000024004Re-query CCDS DB by Protein ID:ENSMUSP00000024004
Original member Current member NCBI NM_009138.3 NP_033164.1 Accepted alive Link to Nucleotide Sequence:NM_009138.3Link to Protein Sequence:NP_033164.1Re-query CCDS DB by Nucleotide ID:NM_009138Re-query CCDS DB by Protein ID:NP_033164Link to BLAST:NP_033164.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033164.1 144 O35903 144 100% 0 0

Chromosomal Locations for CCDS 22085.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 4349822 4349894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 4353883 4354000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 4354091 4354203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 4357593 4357689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 4359482 4359515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (435 nt):
ATGAAACTGTGGCTTTTTGCCTGCCTGGTTGCCTGTTTTGTTGGGGCCTGGATGCCGGTTGTCCATGCCC
AAGGTGCCTTTGAAGACTGCTGCCTGGGTTACCAGCACAGGATCAAATGGAATGTTCTCCGGCATGCTAG
GAATTATCACCAGCAGGAAGTGAGTGGAAGCTGCAACCTACGTGCTGTGAGATTCTACTTCCGCCAGAAA
GTAGTGTGTGGGAATCCAGAGGACATGAATGTGAAGAGGGCGATGAGAATCTTGACAGCTAGGAAAAGGC
TAGTCCACTGGAAGAGCGCCTCAGACTCTCAGACTGAAAGGAAGAAGTCAAACCATATGAAGTCCAAGGT
GGAGAACCCCAACAGTACAAGCGTGAGGAGTGCCACCCTAGGTCATCCCAGGATGGTGATGATGCCCAGA
AAGACCAACAATTAA

Translation (144 aa):
MKLWLFACLVACFVGAWMPVVHAQGAFEDCCLGYQHRIKWNVLRHARNYHQQEVSGSCNLRAVRFYFRQK
VVCGNPEDMNVKRAMRILTARKRLVHWKSASDSQTERKKSNHMKSKVENPNSTSVRSATLGHPRMVMMPR
KTNN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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