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Report for CCDS37025.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37025.1 Public Mus musculus 15 C6 23 108 98 CCDS HistoryNCBI Gene:12274Re-query CCDS DB by CCDS ID:37025.1Re-query CCDS DB by GeneID:12274See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37025.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022788.14 ENSMUSP00000022788.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022788.14Link to Ensembl Protein Viewer:ENSMUSP00000022788.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000022788Re-query CCDS DB by Protein ID:ENSMUSP00000022788
Original member Current member EBI ENSMUST00000162585.7 ENSMUSP00000124417.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162585.7Link to Ensembl Protein Viewer:ENSMUSP00000124417.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162585Re-query CCDS DB by Protein ID:ENSMUSP00000124417
Original member Current member NCBI NM_016704.2 NP_057913.2 Accepted alive Link to Nucleotide Sequence:NM_016704.2Link to Protein Sequence:NP_057913.2Re-query CCDS DB by Nucleotide ID:NM_016704Re-query CCDS DB by Protein ID:NP_057913Link to BLAST:NP_057913.2

Chromosomal Locations for CCDS 37025.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 4731660 4731802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 4733663 4733819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 4735124 4735268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 4739759 4739900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 4755241 4755379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 4759801 4760001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 4763342 4763582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 4781840 4781962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 4789479 4789645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 4790967 4791192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 4792685 4792856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 4793130 4793241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 4796905 4797037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 4798252 4798440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 4803623 4803642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2310 nt):
ATGACCAGACATCTCACCTTGTGTTTCATTTTGCTGGTCATGCTGATTGACAAGAGTGAAGCCTGTTTCT
GTGACCACTACCCATGGACTCACTGGTCCAGCTGTTCTAAGTCCTGCAATTCTGGAACCCAGAGCAGACA
GAGACAAGTAGTAGTGAACGATTACTATTGGAAAAACTTATGCGATAAGCTTTGTATCAAGCAGGAGACC
AGAGAGTGCAACTTGCAGACATGTCCCATCAACTGTGTCCTAGGAGACTATGGGACATGGTCAGACTGTG
ACCCTTGTACTGAAAAACAGGTTAAAGTTAAATCTGTCCTGCGCCCAAGTCAGTTTGGGGGGCAACCATG
CACAGAGCCCCTGGTGACCTTTCAACCATGTGTCCCCTCCAAGCTCTGCAAAATTGAAGAGACTAACTGC
AAGAATAAGTTCCTCTGTGACAGTGGGCGCTGTATTCCCAGCAAGTTAGAATGCAATGGAGAGAATGACT
GTGGAGACAATTCAGATGAAAGGAACTGTGGGAGGACAAAGCCAGTGTGCACACGGATATACACTCCCAT
CCCTAGTGTGCAGCTGATGGGCACTGGGTTTCATTTTCTGGCAGGAGAGCCCAGAGGAGAAGTTCTTGAC
AACTCTTTCACTGGAGGAATATGTAAACTTGTCAAGACCAGTCGAGCCAGTAATCCATACCGTGTTTCAG
CCAATCTGGAAAATGTCAACTTTGAGGTACAAACTATAGAAGATGACTTGAAAACAGAATTCTACAAGAA
TTTAATCTCTTTTGAAAAAAATAAAAATGAAGACAGTCTTTCAGTGGATGAAAGGACAAAATTTTTCCCT
ATACCAATTTTCCATTTCTCAGAGAAAAATGAACATTCCCATTATAGCTCTGCCTTCAACAAAGTCATTA
AAGCTTCCCACAAGAAGGATTCTAGCTTTATCAGGATCCATAAGCTGATAAAAGTCTTAAACTTCACAAT
GAAAGCAACAGACCTACAGCTTTCAGATGTCTTCCTGAAAGCCCTTGTCCACCTGCCTTTAGAATACAAC
TCTGCTGTGTACAGCCGGATATTTGATGACTTCGGGACCCACTACTTCACCTCAGGCTCCCTTGGGGGCA
AGTATGACCTTATCTACCAATTCAGCCGCCAGGAGCTACAGAACTCAGGTTTAACAGAAGAAGAAGCTCA
AAACTGTGTCCAGTATGAAACAAAGAAACTTAAGTTTCTTTATATGGAAATACACAAGGAAGACACGTGC
ACCAAAAACAAGCTGTCTGAAAAATATGGAGGTTCCTTTTTGCAGGGATCAGAGAAATCCATTTCCCTGG
TCCAGGGCGGGAGGAGTCAGCAGGCAGCAGCCTTGGCTTGGGAGAAGGGCACCTCTGGTCCAGAGGAGAA
TGTCTATTCTGAGTGGCTAGAATCGGTGAAGGAAAACCCTGCTGTAGTTGATTATAAGCTTGCCCCAATT
ACAGACTTGGTCAGAAACATCCCATGTGCAGTGACAAAACGGAACAACCTCAGGAGAGCGCTTCAAGAGT
ATGCAGCCAAGTTTGACCCTTGCCAGTGTGCTCCATGTCCCAATAATGGCCGCCCCAGGCTCTCAGGCAC
GGAATGCCTGTGTGTGTGCCAGAGCGGCACCTACGGTGAGAACTGTGAGCGCAGGTCCCCAGGTTACAAA
TCTGATGCAGTGGATGGAAACTGGGGCTGCTGGTCTTCCTGGAGTGCGTGCAATGCTGCTTATAGGAGAT
CAAGAACCCGAGAGTGTAATAACCCTGCGCCACAGCGAGGAGGACAAAGCTGTGGTGGCAAGGATCAGCA
AGAAGAAGACTGTACAGTCTCAATAATGGAAAATGTTGGACAACCATGTATCAATGATGATGAAGAAATG
AAAGAAGTAGACCTTGCTGAGCCAGAAGCAGAATCAGGGTGTTCTCAACCACCTCTCCCAGAAAACGCAT
TTACCTGGAATGAGAAGAAACTGTACTCAGTTGGGGAGGAAGTTGAAATTTCATGTCTTACTGGATTCAC
AGCTGTTGGATTCCAGTACTTGAGATGTTTACCAGACAGAACCTGGAGTCAAGGAGATGTGGAATGCCAA
AGGACCTCGTGCCTCAAGCCCGTTGTTCAGGATGTCCTGACCATCTCCCCATTTCAGAGAGTGTATCAGA
TTGGGGAATCCATTGAGCTGACATGCCCCAGAGGCTTTGTTGTTGCTGGACCATCAAGGTATACATGCAA
GGAAGACTCCTGGACACCTCCCATTTCAAATTCATTGACCTGTGAACAAGGTGTCAGAGACCATCCGTGA

Translation (769 aa):
MTRHLTLCFILLVMLIDKSEACFCDHYPWTHWSSCSKSCNSGTQSRQRQVVVNDYYWKNLCDKLCIKQET
RECNLQTCPINCVLGDYGTWSDCDPCTEKQVKVKSVLRPSQFGGQPCTEPLVTFQPCVPSKLCKIEETNC
KNKFLCDSGRCIPSKLECNGENDCGDNSDERNCGRTKPVCTRIYTPIPSVQLMGTGFHFLAGEPRGEVLD
NSFTGGICKLVKTSRASNPYRVSANLENVNFEVQTIEDDLKTEFYKNLISFEKNKNEDSLSVDERTKFFP
IPIFHFSEKNEHSHYSSAFNKVIKASHKKDSSFIRIHKLIKVLNFTMKATDLQLSDVFLKALVHLPLEYN
SAVYSRIFDDFGTHYFTSGSLGGKYDLIYQFSRQELQNSGLTEEEAQNCVQYETKKLKFLYMEIHKEDTC
TKNKLSEKYGGSFLQGSEKSISLVQGGRSQQAAALAWEKGTSGPEENVYSEWLESVKENPAVVDYKLAPI
TDLVRNIPCAVTKRNNLRRALQEYAAKFDPCQCAPCPNNGRPRLSGTECLCVCQSGTYGENCERRSPGYK
SDAVDGNWGCWSSWSACNAAYRRSRTRECNNPAPQRGGQSCGGKDQQEEDCTVSIMENVGQPCINDDEEM
KEVDLAEPEAESGCSQPPLPENAFTWNEKKLYSVGEEVEISCLTGFTAVGFQYLRCLPDRTWSQGDVECQ
RTSCLKPVVQDVLTISPFQRVYQIGESIELTCPRGFVVAGPSRYTCKEDSWTPPISNSLTCEQGVRDHP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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