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Report for CCDS48856.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48856.1 Public Mus musculus 11 Eral1 23 108 98 CCDS HistoryNCBI Gene:57837Re-query CCDS DB by CCDS ID:48856.1Re-query CCDS DB by GeneID:57837See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48856.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021183.3 ENSMUSP00000021183.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021183.3Link to Ensembl Protein Viewer:ENSMUSP00000021183.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000021183Re-query CCDS DB by Protein ID:ENSMUSP00000021183
Original member Current member NCBI NM_022313.2 NP_071708.2 Accepted alive Link to Nucleotide Sequence:NM_022313.2Link to Protein Sequence:NP_071708.2Re-query CCDS DB by Nucleotide ID:NM_022313Re-query CCDS DB by Protein ID:NP_071708Link to BLAST:NP_071708.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071708.2 437 Q9CZU4 437 100% 0 0

Chromosomal Locations for CCDS 48856.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 78074052 78074174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78074280 78074360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78074478 78074627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78075391 78075639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78075722 78075834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78075990 78076051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78076233 78076279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78077817 78077894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78078262 78078389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78080077 78080359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1314 nt):
ATGGCTGCCCCCAGGCGGTACTGCGCTGGGCTCGTTCGGGCCTTGTTAGGGGCCCGACAGGTGGGTTCGC
ATGCAGGGAGGGAATGGCTTGCTCCGCCCGGCTGTCTTCTAGGTAACCAGGCGAGGTGCGTGTCCTGTGT
CGTGGGCTCCACTTTCTCTGGTCCCCTCCTGGCCTCGGCCTCTAGTCGTTATGGTCAGGACTCCGCCTTG
GACCGTATCCTTGGATTTTCTCAGCCTGACAGTTCGTTGGTTCCGAGCGTCCCCGCGGTGTCGGTGCACA
GAGATGAGCAGAATCTACTCTTGGTGCACACTCCCGACATGCCTGAGAATCCACGGGTCCTCCGCGTGGT
CCTCCTGGGAGCCCCAAATGCAGGGAAGTCAACACTTTCCAATCAGCTGCTGGGCCGTAAAGTGTTTCCT
GTTTCAAAGAAGGTGCACACCACTCGATGTCAAGCTCTGGGGGTCATCACAGAGAAGGAGACCCAAGTGA
TTCTGCTTGACACACCTGGCATCATCAGTCCTGTTAAACAGAAGAGGCACCATCTGGAGCGCTCTTTGCT
GGAAGATCCATGGACGAGCATGGAATCTGCTGATCTTGTTGTAGTTCTTGTGGATGTGTCAGACAAGTGG
ACCAGGAGTCGGCTCAACCCCCAGGTGCTGCAGTGCTTGACCAAGTTCTCTCAGGTCCCTAGCATCCTCG
TCTTAAACAAGGTAGATTGCCTGAAGCAGAAGTCAGTTCTCCTGGAGCTGACAGCAGCCCTCACTGAAGG
TGTTGTCAATGGCAAGAAGCTTAATATCAAGCAGGCCTTGCGCTCACGCTCCAGCACCCACTGCCCTGGC
CCTGAAACTGAGGGCCCAAATGCACACTCAGTGAGGAACCCTCAGAGAATTGGCTGGCCCTACTTCCAGG
AGATCTTCATGTTATCAGCACTAAACAACAAGGATGTGAACACATTGAAGCAATACCTTCTGACACAGGC
CCAGCCAGGACCCTGGGAGTTCCACAGTGGTGTGCTCACTAGCCAGACACCCGAAGAGATCTGTGCCAAT
AAAATCAGAGAGAAGCTCTTAGAGTACCTGCCTGAGGAGGTGCCCTACGGTGTGCAGCAGAAGACAGTGA
TATGGGAGGAAGGACCAAGTGGAGAGCTAGTGATCCAACAGAACCTTCTGGTGCCCAAAGAATCTCATGT
GAGGATCCTGATTGGTCAGAAGGGCCTCTTGATCTCCCAGATTGCACAGGAGGTGGGCCGGGACCTCATG
GACATCTTCCACTGTGACGTTCTCATCCGCCTCTCTGTGAAACTCCTCAAATGA

Translation (437 aa):
MAAPRRYCAGLVRALLGARQVGSHAGREWLAPPGCLLGNQARCVSCVVGSTFSGPLLASASSRYGQDSAL
DRILGFSQPDSSLVPSVPAVSVHRDEQNLLLVHTPDMPENPRVLRVVLLGAPNAGKSTLSNQLLGRKVFP
VSKKVHTTRCQALGVITEKETQVILLDTPGIISPVKQKRHHLERSLLEDPWTSMESADLVVVLVDVSDKW
TRSRLNPQVLQCLTKFSQVPSILVLNKVDCLKQKSVLLELTAALTEGVVNGKKLNIKQALRSRSSTHCPG
PETEGPNAHSVRNPQRIGWPYFQEIFMLSALNNKDVNTLKQYLLTQAQPGPWEFHSGVLTSQTPEEICAN
KIREKLLEYLPEEVPYGVQQKTVIWEEGPSGELVIQQNLLVPKESHVRILIGQKGLLISQIAQEVGRDLM
DIFHCDVLIRLSVKLLK


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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