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Report for CCDS24205.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24205.1 Public Mus musculus 10 Tmbim4 23 108 98 CCDS HistoryNCBI Gene:68212Re-query CCDS DB by CCDS ID:24205.1Re-query CCDS DB by GeneID:68212See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 24205.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020446.10 ENSMUSP00000020446.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020446.10Link to Ensembl Protein Viewer:ENSMUSP00000020446.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000020446Re-query CCDS DB by Protein ID:ENSMUSP00000020446
Original member Current member NCBI NM_026617.3 NP_080893.1 Accepted alive Link to Nucleotide Sequence:NM_026617.3Link to Protein Sequence:NP_080893.1Re-query CCDS DB by Nucleotide ID:NM_026617Re-query CCDS DB by Protein ID:NP_080893Link to BLAST:NP_080893.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080893.1 238 Q9DA39 238 100% 0 0

Chromosomal Locations for CCDS 24205.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 120208846 120208942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 120215541 120215649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 120217504 120217609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 120220751 120220784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 120222006 120222123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 120223837 120223882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 120224620 120224826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (717 nt):
ATGGCCGACACGGACCCGGGCTATCCCCGCTCGTCCATCGAGGATGACTTCAACTACGGCAGCTGCGTGG
CGTCGGCCAGCGTGCACATCCGCATGGCCTTTCTCAGAAAAGTCTACAGTATCCTCTCTCTGCAAGTCCT
CCTGACTACAGTGACCTCTGCCCTGTTCCTGTATTTCCAAGCTCTGCGGACATTTGTCCATGAAAGCCCT
GCCTTAATTGTGGTGTTTGCTCTGGGATCTCTGGGCTTGATCTTTGCACTGACTCTGCACAGACACACGC
ATCCTCTGAACCTCTATCTACTCTTTGCATTTACACTGTCAGAATCCCTGGCCGTGGCAGCTGTTGTTAC
CTTCTATGATGTATATCTGGTTCTGCAAGCGTTTATAATGACTACTGCAGTCTTTCTTGGCTTGACTGCC
TATACTCTACAATCAAAGAGAGATTTCACCAAATTCGGAGCAGGGTTGTTTGCTGGTTTGTGGATTTTGT
GCTTGGCAGGATTCTTGAAGCTGTTTTTTTACAGTGAGACGATGGAGCTGGTCTTGGCCTCTCTAGGCGC
CCTCCTCTTCTGTGGGTTCATCATCTATGATACACACTCGCTGATGCACAGACTCTCTCCCGAAGAGTAC
GTGATCGCTGCCATCAGTCTCTACATGGATATCATCAACCTCTTCCTGCACCTGTTGAAGTTTCTGGAAG
CAGTTAATAAAAAGTAA

Translation (238 aa):
MADTDPGYPRSSIEDDFNYGSCVASASVHIRMAFLRKVYSILSLQVLLTTVTSALFLYFQALRTFVHESP
ALIVVFALGSLGLIFALTLHRHTHPLNLYLLFAFTLSESLAVAAVVTFYDVYLVLQAFIMTTAVFLGLTA
YTLQSKRDFTKFGAGLFAGLWILCLAGFLKLFFYSETMELVLASLGALLFCGFIIYDTHSLMHRLSPEEY
VIAAISLYMDIINLFLHLLKFLEAVNKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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