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Report for CCDS28489.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28489.1 Public Mus musculus 17 Nherf2 23 108 98 CCDS HistoryNCBI Gene:65962Re-query CCDS DB by CCDS ID:28489.1Re-query CCDS DB by GeneID:65962See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28489.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019684.12 ENSMUSP00000019684.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019684.12Link to Ensembl Protein Viewer:ENSMUSP00000019684.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000019684Re-query CCDS DB by Protein ID:ENSMUSP00000019684
Original member Current member NCBI NM_023449.3 NP_075938.2 Accepted alive Link to Nucleotide Sequence:NM_023449.3Link to Protein Sequence:NP_075938.2Re-query CCDS DB by Nucleotide ID:NM_023449Re-query CCDS DB by Protein ID:NP_075938Link to BLAST:NP_075938.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075938.2 226 Q9JHL1-2 226 99.5575% 0 1

Chromosomal Locations for CCDS 28489.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 24640231 24640389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24640595 24640657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24641709 24641752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24641819 24641972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24642191 24642370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24644819 24644899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (681 nt):
ATGGCTCGCTCCAGGACTAGCATGCTGCCTGCCTCAGCCCCAGGAGCCCCTCCTGTGAACTCTCAACTGG
GGCTTACTCAGGATGTCAATGGGCCCCCAAGAGAGCTGCGTCCCCGGCTCTGCCACTTGCGAAGGGGACC
CCAGGGCTACGGGTTCAACCTGCATAGTGACAAGTCCCGGCCTGGCCAGTACATCCGCTCTGTGGACCCT
GGCTCTCCTGCTTCTCACTCTGGCCTCCGTGCCCAGGATCGGCTCATTGAGGTGAATGGGCAGAACGTGG
AGGGGCTGCGACATGCCGAGGTTGTCGCCAGAATCAAGGCACAGGAGGACGAGGCCCGGCTGCTGGTAGT
CGATCCTGAGACTGATGAACACTTCAAGCGGTTGAGGGTCATACCCACTGAGGAACATGTAGAAGGTCCA
CTGCCATCACCAGTCACGAACGGGACCAGTCCTGCCCAGCTCAATGGTGGCTCTGTGTGCTCATCCCGAA
GTGACCTGCCAGGCTCAGAGAAGGACAATGAGGATGGCAGTACCTGGAAGCGAGACCCCTTCCAGGAAAG
TGGCCTCCACCTGAGTCCCACAGCAGCTGAGGCCAAGGAGAAGGCTCGAGCTACTCGGGTCAACAAGCGG
GCACCACAGATGGACTGGAACCGGAAGCGAGAGATCTTCAGCAACTTCTGA

Translation (226 aa):
MARSRTSMLPASAPGAPPVNSQLGLTQDVNGPPRELRPRLCHLRRGPQGYGFNLHSDKSRPGQYIRSVDP
GSPASHSGLRAQDRLIEVNGQNVEGLRHAEVVARIKAQEDEARLLVVDPETDEHFKRLRVIPTEEHVEGP
LPSPVTNGTSPAQLNGGSVCSSRSDLPGSEKDNEDGSTWKRDPFQESGLHLSPTAAEAKEKARATRVNKR
APQMDWNRKREIFSNF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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