NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS22742.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22742.1 Public Mus musculus 8 Trappc2l 23 108 98 CCDS HistoryNCBI Gene:59005Re-query CCDS DB by CCDS ID:22742.1Re-query CCDS DB by GeneID:59005See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22742.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000015157.9 ENSMUSP00000015157.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000015157.9Link to Ensembl Protein Viewer:ENSMUSP00000015157.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000015157Re-query CCDS DB by Protein ID:ENSMUSP00000015157
Original member Current member NCBI NM_021502.2 NP_067477.1 Accepted alive Link to Nucleotide Sequence:NM_021502.2Link to Protein Sequence:NP_067477.1Re-query CCDS DB by Nucleotide ID:NM_021502Re-query CCDS DB by Protein ID:NP_067477Link to BLAST:NP_067477.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067477.1 139 Q9JME7 139 100% 0 0

Chromosomal Locations for CCDS 22742.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 122611661 122611693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122613066 122613238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122613921 122614008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122614308 122614387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122615391 122615436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (420 nt):
ATGGCGGTGTGCATCGCGGTGATCGCCAAGGAGAATTACCCTCTGTACATCCGAAGCACTCCGACAGAGA
GTGAGCTCAAGTTCCACTACATGGTGCACACGTCTCTGGATGTGGTAGACGAGAAGATCTCTGCCATGGG
GAAAGCACTGGTGGACCAGAGGGAGCTGTACCTGGGCCTGCTCTACCCCACCGAGGACTACAAGGTATAT
GGGTATGTGACCAATTCCAAGGTGAAATTTGTCATGGTCGTGGATTCCTCCAATACAGCCCTTCGGGACA
ACGAGATCCGCAGTATGTTCCGGAAGCTGCATAACTCTTACACAGATGTGATGTGCAACCCCTTCTACAA
CCCGGGAGACCGCATCCAGTCAAGGGCCTTTGATACCATGGTGACTTCCATGATGATCCAGGTGTGCTGA

Translation (139 aa):
MAVCIAVIAKENYPLYIRSTPTESELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLGLLYPTEDYKVY
GYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTDVMCNPFYNPGDRIQSRAFDTMVTSMMIQVC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH