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Report for CCDS24377.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24377.1 Public Mus musculus 11 Sec14l2 23 108 98 CCDS HistoryNCBI Gene:67815Re-query CCDS DB by CCDS ID:24377.1Re-query CCDS DB by GeneID:67815See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 24377.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003681.7 ENSMUSP00000003681.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003681.7Link to Ensembl Protein Viewer:ENSMUSP00000003681.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000003681Re-query CCDS DB by Protein ID:ENSMUSP00000003681
Original member Current member NCBI NM_144520.2 NP_653103.1 Accepted alive Link to Nucleotide Sequence:NM_144520.2Link to Protein Sequence:NP_653103.1Re-query CCDS DB by Nucleotide ID:NM_144520Re-query CCDS DB by Protein ID:NP_653103Link to BLAST:NP_653103.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_653103.1 403 Q99J08 403 100% 0 0

Chromosomal Locations for CCDS 24377.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 4098305 4098435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4103388 4103557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4103674 4103813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4103895 4104001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4108497 4108580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4108964 4109024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4109149 4109244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4111037 4111225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4111443 4111502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4111894 4111937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4116681 4116756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4118625 4118678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1212 nt):
ATGAGCGGCAGAGTCGGTGACCTGAGCCCCAAACAGGAGGAGGCACTGGCCAAGTTCCGAGAAAATGTTC
AGGACGTGCTGCCCACCCTGCCCAATCCAGATGACTACTTCCTCCTTCGATGGCTCCGAGCCCGAAGCTT
TGACCTGCAGAAGTCAGAGGCCATGCTCCGAAAGCATGTGGAATTCCGGAAGCAAAAGGACATTGACAAA
ATCATCAGCTGGCAGCCACCAGAGGTGATCCAACAGTATCTGTCAGGCGGCAGATGTGGCTACGACTTGG
ACGGCTGCCCTGTCTGGTACGACATCATCGGCCCTCTGGATGCCAAAGGTCTGCTGTTCTCCGCCTCCAA
GCAGGACCTGCTCAGGACCAAGATGAGAGACTGTGAGCTGCTTCTGCAGGAGTGTATCCAGCAGACCACA
AAGCTAGGGAAGAAGATAGAGACCATCACCATGATTTATGACTGTGAAGGACTCGGCCTCAAGCACCTCT
GGAAACCTGCAGTGGAGGCCTATGGAGAGTTCCTCACCATGTTTGAAGAAAATTATCCTGAAACACTGAA
GCGTCTGTTTGTTGTTAAAGCTCCCAAGCTGTTTCCTGTGGCCTATAACCTCATCAAGCCCTTCCTAAGT
GAAGACACTCGGAGGAAGATCATGGTTCTGGGGGCAAACTGGAAGGAGGTTTTACTCAAACATATCAGCC
CTGACCAGCTGCCTGTGGAATACGGAGGCACCATGACAGATCCTGACGGAAATCCCAAGTGTAAATCTAA
GATCAACTATGGGGGCGACATTCCCAAGCAGTACTACGTGCGAGACCAGGTGAAGCAGCAGTATGAACAC
ACCGTGCAGGTCTCCCGAGGCTCCTCCCACCAAGTGGAGTATGAGATTCTTTTCCCGGGCTGTGTCCTCA
GGTGGCAGTTTATGTCGGAGGGATCAGACGTGGGTTTTGGGATTTTCCTGAAGACCAAGATGGGGGAACG
GCAGCGGGCAGGGGAGATGACGGAGGTGCTGCCAAACCAGAGATACAATTCCCACATGGTGCCTGAGGAT
GGAACCCTCACCTGCAGTGAGCCAGGCATCTATGTTCTGCGGTTCGACAACACCTACAGCTTCATCCATG
CCAAGAAAGTCAGTTTCACCGTGGAGGTCCTGCTTCCAGACAAAGCAGCCGAAGAGAAGATGAACCAGCA
GGGGGCAGACACCCCCAAATAA

Translation (403 aa):
MSGRVGDLSPKQEEALAKFRENVQDVLPTLPNPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDK
IISWQPPEVIQQYLSGGRCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRDCELLLQECIQQTT
KLGKKIETITMIYDCEGLGLKHLWKPAVEAYGEFLTMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLS
EDTRRKIMVLGANWKEVLLKHISPDQLPVEYGGTMTDPDGNPKCKSKINYGGDIPKQYYVRDQVKQQYEH
TVQVSRGSSHQVEYEILFPGCVLRWQFMSEGSDVGFGIFLKTKMGERQRAGEMTEVLPNQRYNSHMVPED
GTLTCSEPGIYVLRFDNTYSFIHAKKVSFTVEVLLPDKAAEEKMNQQGADTPK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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