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Report for CCDS88179.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88179.1 Public Mus musculus 11 Dlg4 23 108 98 CCDS HistoryNCBI Gene:13385Re-query CCDS DB by CCDS ID:88179.1Re-query CCDS DB by GeneID:13385See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88179.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018700.13 ENSMUSP00000018700.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018700.13Link to Ensembl Protein Viewer:ENSMUSP00000018700.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000018700Re-query CCDS DB by Protein ID:ENSMUSP00000018700
Original member Current member EBI ENSMUST00000231452.1 ENSMUSP00000155942.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000231452.1Link to Ensembl Protein Viewer:ENSMUSP00000155942.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000231452Re-query CCDS DB by Protein ID:ENSMUSP00000155942
Original member Current member EBI ENSMUST00000231628.1 ENSMUSP00000156059.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000231628.1Link to Ensembl Protein Viewer:ENSMUSP00000156059.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000231628Re-query CCDS DB by Protein ID:ENSMUSP00000156059
Original member Current member NCBI NM_001370672.1 NP_001357601.1 Accepted alive Link to Nucleotide Sequence:NM_001370672.1Link to Protein Sequence:NP_001357601.1Re-query CCDS DB by Nucleotide ID:NM_001370672Re-query CCDS DB by Protein ID:NP_001357601Link to BLAST:NP_001357601.1

Chromosomal Locations for CCDS 88179.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 70030625 70030654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70030867 70030991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70031089 70031258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70031355 70031491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70031645 70031789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70039023 70039318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70039484 70039586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70039747 70039861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70041340 70041516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70041772 70041808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70041901 70041928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70042057 70042104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70042181 70042282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70042571 70042743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70043658 70043767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70044276 70044367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70044589 70044695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1995 nt):
ATGGAGTATGAGGAGATCACATTGGAAAGGGGTAACTCAGGTCTGGGCTTCAGCATCGCAGGTGGCACCG
ACAACCCACACATCGGTGACGACCCATCCATCTTTATCACCAAGATCATTCCTGGTGGGGCTGCAGCCCA
GGATGGCCGCCTCAGGGTCAACGACAGCATCCTGTTTGTCAATGAAGTGGATGTCCGGGAGGTGACCCAT
TCAGCTGCAGTGGAGGCCCTCAAAGAGGCGGGTTCCATCGTTCGCCTCTACGTCATGCGCCGGAAACCCC
CAGCTGAGAAGATCATAGAGATCAAGCTTATCAAAGGGCCTAAAGGACTTGGCTTCAGCATCGCAGGGGG
CGTTGGGAACCAGCACATCCCTGGAGATAATAGCATCTACGTAACCAAGATCATCGAAGGAGGCGCTGCC
CACAAGGATGGCAGGTTGCAGATCGGAGACAAGATCCTGGCGGTCAACAGTGTGGGGCTAGAGGATGTCA
TGCATGAGGACGCCGTGGCAGCCCTGAAGAACACATATGACGTTGTGTACCTAAAGGTGGCCAAGCCCAG
CAATGCCTACCTGAGTGACAGCTATGCTCCCCCAGACATCACAACCTCATATTCTCAGCACCTGGACAAT
GAGATCAGTCATAGCAGCTACTTGGGCACCGACTACCCCACAGCCATGACCCCCACTTCCCCTCGGCGCT
ACTCCCCCGTGGCCAAGGACCTGCTAGGGGAGGAAGATATTCCCCGGGAACCAAGGCGGATCGTGATCCA
TCGGGGCTCCACCGGCCTGGGCTTCAACATTGTGGGCGGCGAGGACGGTGAAGGCATCTTCATCTCCTTC
ATCCTTGCTGGGGGTCCAGCTGACCTCAGTGGGGAGCTACGGAAGGGGGACCAGATCCTGTCGGTCAATG
GTGTTGACCTCCGCAATGCCAGTCATGAACAGGCTGCCATTGCCCTGAAGAACGCGGGTCAGACGGTCAC
GATCATCGCTCAGTATAAACCAGAAGAGTATAGCCGATTCGAGGCCAAGATCCATGATCTTCGGGAACAG
CTTATGAATAGTAGCCTGGGCTCAGGGACTGCATCTCTGCGAAGCAACCCCAAGCGGGGCTTCTATATCA
GGGCCCTGTTTGACTACGACAAGACCAAGGACTGCGGTTTCTTGAGCCAGGCCCTGAGCTTCCACTTTGG
GGATGTGCTTCATGTAATTGACGCCAGCGACGAAGAGTGGTGGCAAGCGCGGCGGGTCCACTCTGACAGT
GAGACCGATGACATTGGCTTCATTCCCAGCAAACGGCGGGTCGAGCGACGAGAGTGGTCAAGGTTAAAGG
CCAAGGACTGGGGCTCCAGCTCTGGATCACAGGGTCGAGAAGACTCGGTTCTGAGCTATGAGACGGTGAC
GCAGATGGAAGTGCACTACGCTCGCCCCATCATCATCCTTGGGCCTACCAAAGACCGTGCCAACGATGAT
CTTCTCTCCGAGTTCCCCGACAAGTTTGGATCCTGTGTCCCTCATACGACACGTCCTAAGCGGGAATATG
AGATAGACGGCCGCGATTACCACTTTGTCTCCTCCCGGGAGAAAATGGAGAAGGACATTCAGGCGCACAA
GTTCATTGAGGCTGGCCAGTACAACAGCCACCTCTACGGGACCAGCGTCCAGTCTGTGCGAGAGGTAGCA
GAGCAGGGGAAGCACTGCATCCTTGATGTCTCAGCCAATGCCGTGCGGCGGCTGCAGGCGGCCCACCTGC
ACCCTATCGCCATCTTCATCCGTCCCCGCTCCCTGGAGAATGTGCTAGAGATCAATAAGCGGATCACAGA
GGAGCAAGCCCGGAAAGCCTTCGACAGGGCCACGAAGCTGGAGCAGGAGTTCACGGAGTGCTTCTCAGCC
ATCGTAGAGGGCGACAGCTTTGAAGAGATCTATCACAAAGTGAAACGTGTCATCGAAGACCTCTCAGGCC
CCTACATCTGGGTCCCAGCCCGAGAGAGACTCTGA

Translation (664 aa):
MEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTH
SAAVEALKEAGSIVRLYVMRRKPPAEKIIEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAA
HKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAKPSNAYLSDSYAPPDITTSYSQHLDN
EISHSSYLGTDYPTAMTPTSPRRYSPVAKDLLGEEDIPREPRRIVIHRGSTGLGFNIVGGEDGEGIFISF
ILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEAKIHDLREQ
LMNSSLGSGTASLRSNPKRGFYIRALFDYDKTKDCGFLSQALSFHFGDVLHVIDASDEEWWQARRVHSDS
ETDDIGFIPSKRRVERREWSRLKAKDWGSSSGSQGREDSVLSYETVTQMEVHYARPIIILGPTKDRANDD
LLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLYGTSVQSVREVA
EQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRITEEQARKAFDRATKLEQEFTECFSA
IVEGDSFEEIYHKVKRVIEDLSGPYIWVPARERL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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